Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0329.Seq
         (580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63560.1 68414.m07185 receptor-like protein kinase-related co...    31   0.73 
At1g52087.1 68414.m05877 hypothetical protein                          29   3.0  

>At1g63560.1 68414.m07185 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function DUF26; weak similarity to receptor-like protein
           kinase 5 (GI:13506747) [Arabidopsis thaliana]
          Length = 273

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -3

Query: 536 LFIILALAPSLSASQPYYTKHIRRASSSLG 447
           L I++A   SLSAS PYY K I R +   G
Sbjct: 149 LIILIASKSSLSASTPYYVKDISRVNELEG 178


>At1g52087.1 68414.m05877 hypothetical protein
          Length = 671

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 260 PGSHWQY--ARSGVGVWEPRGRCASSEP*ARRHVRINKPDFNDCQ 388
           P + W+Y  + S +  W P    +S  P  ++H++ N PD N  Q
Sbjct: 562 PMTLWRYTFSTSSLIYWTPVRDASSLSPCPKKHLQANSPDCNSPQ 606


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,297,756
Number of Sequences: 28952
Number of extensions: 180024
Number of successful extensions: 383
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)