Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0328.Seq
         (791 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n...    53   7e-06
UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3; ...    51   3e-05
UniRef50_Q6QI94 Cluster: LRRG00114; n=1; Rattus norvegicus|Rep: ...    48   3e-04
UniRef50_UPI0000F2EBCE Cluster: PREDICTED: hypothetical protein;...    40   0.072
UniRef50_Q28GS0 Cluster: Novel protein; n=1; Xenopus tropicalis|...    36   1.2  
UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY0513...    36   1.2  
UniRef50_Q3QYK6 Cluster: Putative DNA topoisomerase III; n=4; Xy...    34   3.6  
UniRef50_A6G2R8 Cluster: Putative uncharacterized protein; n=1; ...    33   8.2  

>UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECD483 UniRef100 entry -
           Gallus gallus
          Length = 103

 Score = 53.2 bits (122), Expect = 7e-06
 Identities = 27/37 (72%), Positives = 29/37 (78%)
 Frame = +3

Query: 510 LQLFLVKIFKVYSFRLRGLVRVPYRYFSSLPPRAGSG 620
           LQ  LVK FKV SF+L+GL RV Y YFSSLPPR GSG
Sbjct: 67  LQWILVKGFKVDSFQLQGLERVLYCYFSSLPPRVGSG 103


>UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 76

 Score = 51.2 bits (117), Expect = 3e-05
 Identities = 29/69 (42%), Positives = 38/69 (55%)
 Frame = +3

Query: 474 SWNYRGCWHQTCLQLFLVKIFKVYSFRLRGLVRVPYRYFSSLPPRAGSG*FARLLPSLDV 653
           SWNYR CWHQT   L    +       +    R  + + S  PP+  SG  +RLL  +D+
Sbjct: 7   SWNYRSCWHQTGPLLGFGTVEN--RTPIHSTKRHQWNW-SLPPPKVSSGKVSRLLLPVDI 63

Query: 654 VAVSQAPSP 680
           VA+SQAPSP
Sbjct: 64  VAISQAPSP 72


>UniRef50_Q6QI94 Cluster: LRRG00114; n=1; Rattus norvegicus|Rep:
           LRRG00114 - Rattus norvegicus (Rat)
          Length = 223

 Score = 48.0 bits (109), Expect = 3e-04
 Identities = 22/23 (95%), Positives = 22/23 (95%)
 Frame = +3

Query: 633 LLPSLDVVAVSQAPSPESNPDSP 701
           LLPSLDVVAVSQAPSPE NPDSP
Sbjct: 167 LLPSLDVVAVSQAPSPELNPDSP 189


>UniRef50_UPI0000F2EBCE Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 493

 Score = 39.9 bits (89), Expect = 0.072
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +2

Query: 563 PRKSPVSLFFVTTSPCREW 619
           PRKSPV LFFVTTSP REW
Sbjct: 24  PRKSPVLLFFVTTSPGREW 42


>UniRef50_Q28GS0 Cluster: Novel protein; n=1; Xenopus
           tropicalis|Rep: Novel protein - Xenopus tropicalis
           (Western clawed frog) (Silurana tropicalis)
          Length = 118

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = -1

Query: 761 MSALSTFDGSFCDYHG 714
           MSALSTFDG+FC YHG
Sbjct: 1   MSALSTFDGTFCAYHG 16


>UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY05130;
           n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05130 - Plasmodium yoelii yoelii
          Length = 402

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +3

Query: 654 VAVSQAPSPESNPDSPLTVTTMVVAETTIES 746
           +A+SQAPSPESN +SPL V  M+     I+S
Sbjct: 372 LAISQAPSPESNSNSPLPVKAMLGQYPNIKS 402


>UniRef50_Q3QYK6 Cluster: Putative DNA topoisomerase III; n=4;
           Xylella fastidiosa|Rep: Putative DNA topoisomerase III -
           Xylella fastidiosa Ann-1
          Length = 193

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = -2

Query: 628 ANYPLPARGGSDEK*--RYG---TLTRPRNRNEYTLNILTRNNWRQVWCQ 494
           AN  + ++ G D K    +G   T+   + RN Y LN++TRN WR V+ +
Sbjct: 30  ANQNMKSKTGDDSKITAHHGIILTILSEKERNIYDLNVVTRNGWRDVYIE 79


>UniRef50_A6G2R8 Cluster: Putative uncharacterized protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Putative
           uncharacterized protein - Plesiocystis pacifica SIR-1
          Length = 434

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +3

Query: 660 VSQAPSPESNPDSPLTVTTMVVAE 731
           V+ AP+P + PDSPLTVTT +  E
Sbjct: 75  VAAAPAPTAAPDSPLTVTTRLTPE 98


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 736,669,944
Number of Sequences: 1657284
Number of extensions: 14543091
Number of successful extensions: 36378
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36366
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67496806780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)