Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0328.Seq
         (791 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    28   0.074
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   4.9  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 28.3 bits (60), Expect = 0.074
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 447 RNNFSIRYWSWNYRGCWHQTC 509
           R+NF   +  WNY  CW   C
Sbjct: 746 RHNFKGLHLDWNYPVCWQSNC 766



 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/25 (32%), Positives = 9/25 (36%)
 Frame = +3

Query: 435  ELFNRNNFSIRYWSWNYRGCWHQTC 509
            +    NNF      W Y  CW   C
Sbjct: 1930 DFIETNNFDGLDLDWEYPKCWQVDC 1954


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +3

Query: 456 FSIRYWSWNYRGCWHQTCL 512
           +++ YW   Y   WH+  L
Sbjct: 117 YAVYYWRQQYEDFWHRYTL 135


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 505 LASNCSSLKYLKCTHSDYEA 564
           +A N SSL+YL   ++D  A
Sbjct: 485 VAGNISSLRYLNLDYNDLSA 504


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,068
Number of Sequences: 336
Number of extensions: 3644
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)