Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0328.Seq
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    29   1.0  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    27   3.1  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   5.4  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   5.4  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.4  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    26   7.1  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.4  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   9.4  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -3

Query: 756 CLINFRW*F---LRLPWLSRLTGNQGSIPEREPEKRLP 652
           C+IN  W     LRL +L +   NQ S  E++ EKR+P
Sbjct: 271 CMINETWPVDRALRLQFLIQQRNNQSSNEEQKQEKRVP 308


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 432  YELFNRNNFSI--RYWSWNYRGCWHQTCLQLFLVKIF 536
            Y+L  R+ F    R+WSW   G +H   L L  + +F
Sbjct: 1035 YQLGQRSEFFNLKRFWSWITNGFYHSLLLFLCSIAVF 1071


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 42   IDENTFGKCFR*SSSCDDPRISPLTSQYEYTQLSLLIITSE 164
            I E+T  +  R S++   P   PL+ +YEY +  + ++  E
Sbjct: 969  IGESTVREALRFSAALRQPASVPLSEKYEYVESVIKLLEME 1009


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 80  FVLRRSKNFTSNVAIRIHPVIPINHYLGVLK-TNKIEPRSYSIIPCTKY 223
           F ++ S + +++++I  HP +PINH     K  N+    +   +P TK+
Sbjct: 149 FEVKNSLHDSTDLSITHHPHLPINHQGNTWKHANESLQSNQGPVPNTKF 197


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 545 LIPITRPRKSPVSLFFVTTSPCREWVICAPAAFL 646
           +IPI +  KS +SL F+T SPC  + IC+  A L
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICSLRARL 75


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 645 LDVVAVSQAPSPESNPDSPLTVTTMVVAETTIES 746
           L ++  S+   P + PD P   T+  V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = +3

Query: 276 CRPTSTXSEXYRDRILILNRRFLERRLTDDMLRKRVSITADACTDSAAHKCNYELFNRNN 455
           C P  +  +   +RILI  R F             + I  D     AA KC +E      
Sbjct: 32  CNPCYSIEKLKSNRILIAVRLF---SFAFSSFSTTLRILRDFII--AASKCEFEKIWSTT 86

Query: 456 FSIRYWSWNYR 488
           FSI + S+N++
Sbjct: 87  FSISFLSFNFK 97


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 723 LPWLSRLTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVTKN 586
           +P +S +  +   IPER+  + L  P       + H    EVV +N
Sbjct: 757 VPCISGVMLHSKIIPERKNSEFLSFPTSQQECLLVHDNQAEVVVQN 802


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,567
Number of Sequences: 5004
Number of extensions: 60400
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)