Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0328.Seq
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   2e-08
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   2e-06
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   2e-06
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   9e-06
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   9e-06
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   2e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.002
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.009
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.012
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.050
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.35 
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   5.7  
SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)          28   10.0 

>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = -1

Query: 101 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDT 3
           SWI  RRT+AKAFAK VFINQERKLE RRR DT
Sbjct: 4   SWIYERRTTAKAFAKNVFINQERKLEDRRRSDT 36


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/28 (85%), Positives = 25/28 (89%)
 Frame = -1

Query: 86 RRTSAKAFAKGVFINQERKLEVRRRLDT 3
          RRT+AKAFAK VFINQERKLE RRR DT
Sbjct: 9  RRTTAKAFAKNVFINQERKLEDRRRSDT 36


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/28 (85%), Positives = 25/28 (89%)
 Frame = -1

Query: 86 RRTSAKAFAKGVFINQERKLEVRRRLDT 3
          RRT+AKAFAK VFINQERKLE RRR DT
Sbjct: 9  RRTTAKAFAKNVFINQERKLEDRRRSDT 36


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/28 (85%), Positives = 25/28 (89%)
 Frame = -1

Query: 86 RRTSAKAFAKGVFINQERKLEVRRRLDT 3
          RRT+AKAFAK VFINQERKLE RRR DT
Sbjct: 9  RRTTAKAFAKNVFINQERKLEDRRRSDT 36


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/28 (85%), Positives = 25/28 (89%)
 Frame = -1

Query: 86 RRTSAKAFAKGVFINQERKLEVRRRLDT 3
          RRT+AKAFAK VFINQERKLE RRR DT
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDT 38


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = -1

Query: 83 RTSAKAFAKGVFINQERKLEVRRRLDT 3
          RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2  RTTAKAFAKNVFINQERKLEDRRRSDT 28


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = -1

Query: 83  RTSAKAFAKGVFINQERKLEVRRRLDT 3
           RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 29  RTTAKAFAKNVFINQERKLEDRRRSDT 55


>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 20/24 (83%), Positives = 21/24 (87%)
 Frame = +3

Query: 648 DVVAVSQAPSPESNPDSPLTVTTM 719
           DVVAVSQAPSPESNP+SP  V TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = -3

Query: 108 VKFLDRRKTNFSESICQRCFHQSRTKV 28
           VKFLD RKTN+ ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28



 Score = 31.5 bits (68), Expect = 0.81
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -1

Query: 86 RRTS-AKAFAKGVFINQERKLEVRRRLDT 3
          R+T+  ++  +  FINQERKLE RRR DT
Sbjct: 8  RKTNYCESICQECFINQERKLEDRRRSDT 36


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = -3

Query: 108 VKFLDRRKTNFSESICQRCFHQSRTKV 28
           VKFLD RKTN+ ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28



 Score = 31.5 bits (68), Expect = 0.81
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -1

Query: 86 RRTS-AKAFAKGVFINQERKLEVRRRLDT 3
          R+T+  ++  +  FINQERKLE RRR DT
Sbjct: 8  RKTNYCESICQECFINQERKLEDRRRSDT 36


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = +3

Query: 657 AVSQAPSPESNPDSPLTVTTM 719
           AVSQAPSPESNP+SP  V TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 19/29 (65%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
 Frame = -1

Query: 86 RRTS-AKAFAKGVFINQERKLEVRRRLDT 3
          R+T+  ++ AK VFINQERKLE RRR DT
Sbjct: 8  RKTNYCESIAKNVFINQERKLEDRRRSDT 36



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 108 VKFLDRRKTNFSESICQRCFHQSRTKV 28
           VKFLD RKTN+ ESI +  F     K+
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKL 28


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = -3

Query: 108 VKFLDRRKTNFSESICQRCFHQSRTKV 28
           VKFLD RKTN+ ESICQ  F     K+
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKL 28



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = -1

Query: 86 RRTS-AKAFAKGVFINQERKLEVRRRLDT 3
          R+T+  ++  + VFINQERKLE RRR DT
Sbjct: 8  RKTNYCESICQDVFINQERKLEDRRRSDT 36


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +1

Query: 658 PFLRLPLRNRTLIPR*P 708
           PFLRLPLRNRTLI R P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 105 KFLDRRKTNFSESICQRCFHQSRTKV 28
           + L  RKTN+ ESICQ CF     K+
Sbjct: 3   EILGFRKTNYCESICQECFINQERKL 28



 Score = 31.5 bits (68), Expect = 0.81
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -1

Query: 86 RRTS-AKAFAKGVFINQERKLEVRRRLDT 3
          R+T+  ++  +  FINQERKLE RRR DT
Sbjct: 8  RKTNYCESICQECFINQERKLEDRRRSDT 36


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 426 CNYELFNRNNFSIRYWSWNYRGCWH 500
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)
          Length = 735

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 777 GDASFNVCLINFRW 736
           GDA +N+ L+NFRW
Sbjct: 389 GDAEYNLTLLNFRW 402


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,938,313
Number of Sequences: 59808
Number of extensions: 464397
Number of successful extensions: 1109
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)