Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0328.Seq
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   4.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.5  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   9.9  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   9.9  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   9.9  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   9.9  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   9.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.9  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 184 YFVGFQNS-EVMINRDNWVYSYCDVRGEILGSSQDELQR 71
           Y +   N  + +IN D   +++ DV   ILG++ D+L R
Sbjct: 380 YMLALSNRMQKIINND---FNFNDVNFRILGANVDDLMR 415


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 649  SKEGSRRANYPLPARGGSDEK*RYG 575
            +K  S+ AN P PA GG   + + G
Sbjct: 1014 AKPQSQEANKPKPATGGKGTRPKRG 1038


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 547 EYTLNILTRNNWRQVW 500
           EY LN+   NN R  W
Sbjct: 410 EYFLNLTVENNRRNPW 425


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 411 SAAHKCNYELFNRNNFSIRYWSWNY 485
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 411 SAAHKCNYELFNRNNFSIRYWSWNY 485
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 411 SAAHKCNYELFNRNNFSIRYWSWNY 485
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 411 SAAHKCNYELFNRNNFSIRYWSWNY 485
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 411 SAAHKCNYELFNRNNFSIRYWSWNY 485
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -2

Query: 574  TLTRPRNRNEYTLNILTRNNWRQVW 500
            +L  P+N   + LN+ T     ++W
Sbjct: 1069 SLALPKNEGPFRLNVETAKTNEEMW 1093


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,661
Number of Sequences: 438
Number of extensions: 5026
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)