Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0325.Seq
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 1.9
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 27 1.9
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 2.5
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 2.5
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 4.4
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 7.7
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 7.7
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 25 7.7
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 25 7.7
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 145 FMPVDFTLEAHEDGAQTVWVGETEPMH--GLQVMTGFTLA 258
+ P+DFTL G W G E MH G+ V+ T+A
Sbjct: 139 YSPLDFTLLDPHLGTINDWRGTIEEMHSKGMYVIVDLTVA 178
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 27.1 bits (57), Expect = 1.9
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 321 FLWWANPAVKGGEGHQSVFPPDVTAVFDHGKRAVSAFPIATGTYYKVDYSAGVDISRY 494
F W P G Q F P V V + RA++A P+ T+ ++DY DI +
Sbjct: 348 FFDWELPRSSDG---QYFFKPTVQTVIE---RAIAAAPLGEMTWARMDYPKWQDIKAF 399
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -3
Query: 341 RVGPPQEMTRRGVPVIDAAG---DFQRRPVRARVKPVITCKPCIGSVSPTHTVCAPSS 177
RV P + +RG+P + G + ++ + + T + C+ SVSP H SS
Sbjct: 34 RVWPCENCKKRGIPNLCPNGILVSVSDKLIKLLLSRIDTLQNCVKSVSPNHESLIVSS 91
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.6 bits (56), Expect = 2.5
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 73 VGLLGPWISGGIEFNWPQHHRPTTFMPVDFTLEAHEDGAQTVWVGETEPMH--GLQVMTG 246
+G+ +I+G N P + P + P+DFTL G W +H G V+
Sbjct: 120 MGIKAVYIAGTPFQNLPWY--PDGYSPLDFTLLDKHTGTLNQWHEAIMKLHERGFYVVVD 177
Query: 247 FTLA 258
FT++
Sbjct: 178 FTIS 181
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.8 bits (54), Expect = 4.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +1
Query: 73 VGLLGPWISGGIEFNWPQHHRPTTFMPVDFTLEAHEDGAQTVWVGETEPMH--GLQVMTG 246
+G G +I+G N P + P+D+T+ H G W MH G+ ++
Sbjct: 121 LGTQGIYIAGTPFVNMPWG--ADQYSPLDYTILDHHLGTIDQWRSTITAMHERGMYLVVD 178
Query: 247 FTLALTG 267
T+A G
Sbjct: 179 LTVATLG 185
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -2
Query: 558 HAPTKSYCDFSAIYEVGQAHFYSEKCPLQRSSPLCSKC 445
H +S C I+ G+ + + C + +S LC KC
Sbjct: 89 HGTCESKCGH--IFRKGEVFYRCKTCSVDSNSALCVKC 124
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/42 (23%), Positives = 19/42 (45%)
Frame = -3
Query: 362 PFPPFHCRVGPPQEMTRRGVPVIDAAGDFQRRPVRARVKPVI 237
P+P R PP T +D+A +P++ + P++
Sbjct: 357 PYPSAPTRPTPPTVQTSSSAAPVDSAEPVAYQPIKKPIDPML 398
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = -1
Query: 247 NLSSPVN--HASAPFRLPTPSVH 185
N+ SP + AS+PF + TP+VH
Sbjct: 90 NIESPASPAEASSPFTVRTPTVH 112
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 25.0 bits (52), Expect = 7.7
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Frame = +3
Query: 339 PAVKGGEGH-----QSVFPPDVTAVFDHGKRAVSAFPIATGTYYKVDYSAGVDISRYKNV 503
P + G GH + + P + FD + V A A+ DY A D+SRY +
Sbjct: 101 PPLSNGSGHARSRSHAWWLPYIVVEFDKNEILVDALNTASLENPCWDYQATFDVSRYSKL 160
Query: 504 PVQPHI 521
+ ++
Sbjct: 161 SLNIYL 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,347
Number of Sequences: 5004
Number of extensions: 60830
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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