Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0325.Seq
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1257 - 25241194-25242018 32 0.27
07_01_0163 + 1149466-1150593,1150733-1150937,1151453-1151485,115... 30 1.1
01_06_1577 - 38379951-38380167,38380349-38380543,38380919-383811... 30 1.1
04_03_0111 - 11361954-11363510 29 1.9
02_05_1203 - 34934635-34934749,34934865-34934923,34935019-349351... 29 1.9
07_01_0845 + 6866211-6867143 29 2.6
05_01_0446 - 3551754-3551795,3551932-3552397,3552424-3552921,355... 29 2.6
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657 29 2.6
05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682... 29 3.4
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605... 28 4.5
06_02_0189 - 12816751-12817088,12817272-12817330,12817745-128177... 28 4.5
05_07_0129 - 27886738-27886767,27887043-27887312,27888407-278884... 28 4.5
02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462... 28 4.5
04_04_1701 + 35470535-35471170,35471254-35471403,35471745-354720... 28 5.9
04_03_0369 + 15012906-15014417 28 5.9
04_03_0323 - 14364145-14365656 28 5.9
07_03_1165 - 24459156-24460139 27 7.8
06_03_1373 + 29667871-29668782,29668872-29669851,29670156-296703... 27 7.8
04_04_1692 + 35395409-35395535,35395632-35395849,35397302-35398489 27 7.8
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 27 7.8
01_05_0783 + 25183361-25185628 27 7.8
>07_03_1257 - 25241194-25242018
Length = 274
Score = 32.3 bits (70), Expect = 0.27
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -2
Query: 426 RRRPVCRDQTPPLHPAGRRSDAL---PPLSLPGWPTTRNDAA 310
RRRP R + P HP GR + + PP LP PT DAA
Sbjct: 84 RRRPPRRLHSRPRHPRGRTTASTTPQPPRPLPRQPTVAVDAA 125
>07_01_0163 +
1149466-1150593,1150733-1150937,1151453-1151485,
1152244-1153646
Length = 922
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -3
Query: 413 FAVIKHRRYIRREDALMPFPPFHCRVGPPQEMTRRGVPVIDAA 285
F V KH+R + ED L H R+ EM+ + PV DA+
Sbjct: 484 FFVDKHKRKLSEEDGLERLEMAHIRMEAALEMSGKWPPVTDAS 526
>01_06_1577 -
38379951-38380167,38380349-38380543,38380919-38381191,
38381281-38381455,38381925-38382035,38382120-38382390,
38382990-38383139,38383242-38384246
Length = 798
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -3
Query: 389 YIRREDAL-MPFPPFHCRVGPPQEMTRRGVPVIDAAGDFQRRPVRARVKPVITCKPC 222
Y+ D L M F P Q RG+P I A +R P +RV VI C C
Sbjct: 412 YMFERDVLTMSFAPKDEHEAQVQFALERGIPAISAVMGTKRLPYPSRVFDVIHCARC 468
>04_03_0111 - 11361954-11363510
Length = 518
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 63 TCAGGAAGAVDFRWD*V*LAATSSPDHLYAR*FHP--RSP*RRCTDGVGRRNGADAWFT 233
TC G + WD V L AT+SPD + P R + T+ + +G DAW T
Sbjct: 160 TCGGYGSALYFSLWDSVPLPATASPDDGFPLPRFPDVRVQRSQLTNHLAAADGKDAWST 218
>02_05_1203 -
34934635-34934749,34934865-34934923,34935019-34935120,
34935254-34935333,34935474-34935558,34935641-34935724,
34935842-34935927,34936053-34936135,34936226-34936479
Length = 315
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 410 AVIKHRRYIRR--EDALMPFPPFHCRVGPPQEMTRRGVPVIDAAGDF 276
AV RRY R E+ +P P V P +E +RGV V+ A G F
Sbjct: 55 AVENLRRYWRAAMEELELPLPTEKLAVDPGREGGKRGVAVLVATGSF 101
>07_01_0845 + 6866211-6867143
Length = 310
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Frame = -2
Query: 447 CR*RWG---KRRRPVCRDQTPPLHPA-GRRSDALPPLSLPGWPTTRNDAAWRSR---YRR 289
CR R G + R + ++ TPPL R+S A PP P WPT + W + + R
Sbjct: 43 CRLRNGTLERMMREMAQECTPPLVARRDRKSGATPPPPPPWWPTA-EEPWWGTEVAAHLR 101
Query: 288 GWRFPAP 268
G R P
Sbjct: 102 GRRMATP 108
>05_01_0446 -
3551754-3551795,3551932-3552397,3552424-3552921,
3553288-3553334
Length = 350
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 426 RRRPVCRDQTPPLHPAGRRSDALPPLSLPGWPTTRNDAA 310
+R CR + PP+ A R + + L GWP R+++A
Sbjct: 233 QRTEYCRFEHPPIPIAPRPPRTMEEVVLLGWPPQRSESA 271
>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
Length = 1136
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 435 WGKRRRPVCRDQTPPLHPAGRRSDALPPLSLPG 337
WG R PVCR + GRR + L LPG
Sbjct: 55 WGNRSVPVCRWRGVACGARGRRRGRVVALELPG 87
>05_04_0256 -
19465636-19466709,19467649-19467765,19468168-19468279,
19469019-19469167,19469378-19469449,19469544-19469609,
19471945-19472073,19474539-19474647,19475225-19475304,
19475408-19475533,19475607-19475657,19475738-19475920,
19476019-19476105,19476184-19476294,19476692-19476796,
19477513-19477678,19477769-19477941,19478022-19478094,
19479472-19479655,19479759-19480203
Length = 1203
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -2
Query: 351 LSLPGWPTTRNDAAWRSRYRRGWRFPAPPGQGEGETCHHL 232
LS P P + + WR+ R + P G GEG C L
Sbjct: 87 LSTPQSPQSSHRYVWRALVSRAKQLPLGDGAGEGYPCGQL 126
>08_02_1340 -
26256768-26256999,26258105-26258774,26259273-26260555,
26262403-26263499
Length = 1093
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 192 DGVGRRNGADAWFTGD-DRFH 251
DGV RR+G + WF D DR H
Sbjct: 321 DGVTRRDGGEGWFADDLDRGH 341
>06_02_0189 -
12816751-12817088,12817272-12817330,12817745-12817773,
12817808-12818013,12818245-12818329
Length = 238
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 423 SAFPIATGTYYKVDYSAGVDISRYKNVPVQPHIW 524
+AFP+ TGT + D S D ++ +N +P W
Sbjct: 120 TAFPMETGTTFLTDNSTIADTAKRRNFLEEPGHW 153
>05_07_0129 -
27886738-27886767,27887043-27887312,27888407-27888482,
27889148-27889962
Length = 396
Score = 28.3 bits (60), Expect = 4.5
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = -2
Query: 435 WGKRRRPVCRDQTPPLHPAGRRSDALP-PLSLPGWPTT----RNDAAWRSRYRRG 286
W RRP R PL P S A P P +L T R+DAA R+ YRRG
Sbjct: 343 WATLRRPPPRAPRHPL-PLSLPSSAAPAPAALTQERTILKRRRSDAAIRNEYRRG 396
>02_05_0410 +
28744716-28744841,28745361-28745965,28746151-28746270,
28746597-28746737,28748626-28749370
Length = 578
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 339 PAVKGGEGHQSVFPPDVTAVFDHGKRAVSAFPIATGTYYKVDYSAG 476
PA GG V P D+ A +G++ + P G YY+ S G
Sbjct: 297 PAAAGGRTSGEVVPSDLWAWRKYGQKPIKGSPYPRG-YYRCSSSKG 341
>04_04_1701 +
35470535-35471170,35471254-35471403,35471745-35472015,
35472152-35472262,35472476-35472650,35472748-35473020,
35473251-35473494,35473623-35473708,35473752-35473968
Length = 720
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = -3
Query: 389 YIRREDAL-MPFPPFHCRVGPPQEMTRRGVPVIDAAGDFQRRPVRARVKPVITCKPC 222
Y+ D L M F P Q RG+P + A +R P RV V+ C C
Sbjct: 289 YLFDRDVLTMSFAPKDEHEAQVQFALERGIPAMSAVMGTKRLPFPGRVFDVVHCARC 345
>04_03_0369 + 15012906-15014417
Length = 503
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 321 FLWWANP-AVKGGEGHQSVFPPDVTAVFD 404
F+W P VKGGEG + PP+ A +
Sbjct: 334 FVWVVRPDLVKGGEGDAAALPPEFHAAVE 362
>04_03_0323 - 14364145-14365656
Length = 503
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 321 FLWWANP-AVKGGEGHQSVFPPDVTAVFD 404
F+W P VKGGEG + PP+ A +
Sbjct: 334 FVWVVRPDLVKGGEGDAAALPPEFHAAVE 362
>07_03_1165 - 24459156-24460139
Length = 327
Score = 27.5 bits (58), Expect = 7.8
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = -3
Query: 437 DGESGDGPFAVIKHRRYIRREDALMPFPPF-HCRVGPPQEMTRR--GVPVIDAAGDFQRR 267
D E G P K RR + AL+P PP G ++ R G VI AGD
Sbjct: 45 DDEEGVLPATACKRRRRLDDILALLPSPPTPSTSSGSEGTISDRDHGGDVI-GAGDDDAA 103
Query: 266 PVRARVKPVITCKPC 222
PV AR + C C
Sbjct: 104 PVAARREASFPCHLC 118
>06_03_1373 +
29667871-29668782,29668872-29669851,29670156-29670350,
29670460-29670676
Length = 767
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -3
Query: 380 REDALMPFPPFHCRVGPPQEMTRRGVPVIDAAGDFQRRPVRARVKPVITCKPC 222
R+ M F P Q RG+P I A +R P ++V ++ C C
Sbjct: 385 RDVVAMSFAPKDEHEAQVQMALERGIPAISAVMGSKRLPFPSKVFDLVHCARC 437
>04_04_1692 + 35395409-35395535,35395632-35395849,35397302-35398489
Length = 510
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 192 DGVGRRNGADAWFTGD 239
DG+ RR+G D WF D
Sbjct: 435 DGITRRDGGDGWFADD 450
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 184 GAQTVWVGETEPMHGLQVMTGFTLALTGRRWKSPAASITG 303
GAQ V G + HG + MTG T+ + G+ ++ AA ++G
Sbjct: 1490 GAQAVVEGIGD--HGCEYMTGGTVVILGKTGRNFAAGMSG 1527
>01_05_0783 + 25183361-25185628
Length = 755
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 44 ITMKSLNLRWWGCWGRGFPVGLSLTGRNI-IARPPLCPLI 160
++M++ ++ WWG G P+ T + I + +CP++
Sbjct: 715 LSMENRSISWWGTAGEHCPLASCPTAKGINLGADSVCPVV 754
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,402,094
Number of Sequences: 37544
Number of extensions: 558975
Number of successful extensions: 1878
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1876
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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