Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0325.Seq
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26308| Best HMM Match : Drf_FH1 (HMM E-Value=1.6)                   31   0.65 
SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)               31   0.86 
SB_1650| Best HMM Match : WSC (HMM E-Value=2.5e-06)                    29   2.6  
SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)             29   3.5  
SB_48643| Best HMM Match : DUF663 (HMM E-Value=0)                      28   4.6  
SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_37138| Best HMM Match : RnaseA (HMM E-Value=8)                      28   4.6  
SB_33650| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_4753| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013)                  28   6.1  
SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_26308| Best HMM Match : Drf_FH1 (HMM E-Value=1.6)
          Length = 184

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 20/55 (36%), Positives = 25/55 (45%)
 Frame = -2

Query: 429 KRRRPVCRDQTPPLHPAGRRSDALPPLSLPGWPTTRNDAAWRSRYRRGWRFPAPP 265
           +  RP+ R+   PL   GR S   PP  + G P  R D    +   RG R PA P
Sbjct: 90  RESRPMEREPRGPLPRDGRDSRGPPPRDIRGTPPIREDG--YANTSRGDRGPASP 142


>SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1252

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 23/75 (30%), Positives = 32/75 (42%)
 Frame = -3

Query: 350  FHCRVGPPQEMTRRGVPVIDAAGDFQRRPVRARVKPVITCKPCIGSVSPTHTVCAPSSWA 171
            F C   P   +   GV +ID  G  ++   ++     IT   C G V  T   CA S   
Sbjct: 1112 FQCTDWPDSGLPESGVGLIDLIGQVEKWQQQSG-NTCITVH-CSGGVGRTGVFCAVSILI 1169

Query: 170  SRVKSTGIKVVGR*C 126
             RVK+ G+  V + C
Sbjct: 1170 ERVKAEGLIDVFQTC 1184


>SB_1650| Best HMM Match : WSC (HMM E-Value=2.5e-06)
          Length = 121

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 5   IARGIK*NSAILFITMKSLNLRWWGCWGRGFP 100
           + R IK N  ILFI+++ L  ++ GC+  G P
Sbjct: 11  LTRTIKNNDLILFISLEKLLSQFLGCYKEGTP 42


>SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/54 (38%), Positives = 26/54 (48%)
 Frame = -2

Query: 405 DQTPPLHPAGRRSDALPPLSLPGWPTTRNDAAWRSRYRRGWRFPAPPGQGEGET 244
           D+TP   P  RRSD  P    P  P+ R+D       RR  R PAPP +   +T
Sbjct: 19  DRTPA--PPSRRSDRTPA---P--PSRRSDRTPAPPSRRSDRTPAPPSRRSDQT 65


>SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)
          Length = 234

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 269 RPVRARVKPVITCKPCIGSVSPTHTVCAPSSWASRVKSTG 150
           RP +   +  + C P  G V P  + C  + W  +V S+G
Sbjct: 42  RPAQLNDRVNVACLPSPGDVPPVGSKCWLTGWGRQVDSSG 81


>SB_48643| Best HMM Match : DUF663 (HMM E-Value=0)
          Length = 450

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 372 VFPPDVTAVFDHGKRAVSAFPIATGTYYKVD 464
           +FPP    VF+  ++  S   +ATG+ YKVD
Sbjct: 353 MFPPCPVMVFNADRQTGSHTLVATGSLYKVD 383


>SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
 Frame = -3

Query: 383 RREDALMPFPPFHCRVGPPQ--EMTRRGVPV-IDAAGDFQRRPVRARVKPVITCKPCIG- 216
           R  +A  P  P   +V P     ++RR V + + A GDF  +P   RV+P  T  P +G 
Sbjct: 199 RDSEAGAPLDPSLLKVCPVFFFVLSRRDVRLSVSAQGDFGVQPFADRVRPHHTTHPSLGE 258

Query: 215 ----SVSPTHTVCAPSSWASR 165
               S S      AP++ AS+
Sbjct: 259 APANSASKQRQQIAPANSASK 279


>SB_37138| Best HMM Match : RnaseA (HMM E-Value=8)
          Length = 217

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 390 LHPAGRRSD-ALPPLSLPGWPTTRNDAAWRSR 298
           LH AG+R + ALPP    G PT R+ A   +R
Sbjct: 122 LHSAGKRKEVALPPSRRLGKPTARSSAPGANR 153


>SB_33650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 229 NHASAPFRLPTPSVHRLHGLRG 164
           NHA A F    P++  +HGLRG
Sbjct: 302 NHACAEFPTEPPAIASVHGLRG 323


>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2286

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 419  GPFAVIKHRRYIRREDALMPFPPFHCRVGPPQE 321
            GP A  +H  Y   E A  P P     V PPQ+
Sbjct: 1684 GPAAPARHPHYSPAESACAPLPNEEPSVSPPQQ 1716


>SB_4753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 419 GPFAVIKHRRYIRREDALMPFPPFHCRVGPPQE 321
           GP A  +H  Y   E A  P P     V PPQ+
Sbjct: 368 GPAASARHPHYSPAESACAPLPNEEPSVSPPQQ 400


>SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
          Length = 808

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 402 QTPPLHPAGRRSDALPPLSLP 340
           +T P HP G   DA PP+  P
Sbjct: 617 RTTPYHPQGNGKDAAPPVQAP 637


>SB_30376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 140 PPLCPLISPSKPMKTVHRRCG*AKR 214
           P  C +I+P  P + V RRCG  +R
Sbjct: 716 PARCDVITPVTPEQRVDRRCGCGRR 740


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,667,690
Number of Sequences: 59808
Number of extensions: 541060
Number of successful extensions: 1553
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)