Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0325.Seq
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.13 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    27   0.17 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.40 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.40 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.40 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.6  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   2.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   2.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   2.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 402  QTPPLHPAGRRSDAL-PPLSLPGWPTTRNDAAWRSRYRRGWRFPAPPGQGEGETCHHL 232
            QT P HP    S  + PP+  P   +  + +  +S  R+  R+   P QG G   H++
Sbjct: 1746 QTFP-HPGNGHSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGGSGTHNV 1802


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 549 TKSYCDFSAI-YEVGQAHFYSEKCPLQRSSPLCSKCR*RWGKRRRPVCRD 403
           T S C  +++ Y  GQ H  S+ CP  RS+ L      R G  RRP  R+
Sbjct: 361 TPSKCSQTSVHYSNGQTH--SQLCPTPRSTHLKVSGINRVGSTRRPSRRN 408


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 199 WVGETEPMHGLQVMTGFTLALTGRRWKSPAASITGTPRRVISC 327
           +VG   PMH +    G    +T +R   P    T  P  +++C
Sbjct: 386 YVGRKRPMHNVVYRPGEN-PVTQKREGGPPTGATTGPNEIVTC 427


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 199 WVGETEPMHGLQVMTGFTLALTGRRWKSPAASITGTPRRVISC 327
           +VG   PMH +    G    +T +R   P    T  P  +++C
Sbjct: 406 YVGRKRPMHNVVYRPGEN-PVTQKREGGPPTGATTGPNEIVTC 447


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 199 WVGETEPMHGLQVMTGFTLALTGRRWKSPAASITGTPRRVISC 327
           +VG   PMH +    G    +T +R   P    T  P  +++C
Sbjct: 355 YVGRKRPMHNVVYRPGEN-PVTQKREGGPPTGATTGPNEIVTC 396


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
 Frame = +1

Query: 124 QHHRPTTFMPVDFTLEAHEDGAQTVWVGETEPMHG-LQVMTGFTLALTGRRWKSPAASIT 300
           Q        P +  +E  ED          E   G     T  T+  TG     PAAS T
Sbjct: 175 QRQEERRLRPDEIKVEVGEDEFANGGAARDESKAGSTDASTPATVTTTGATTTLPAASAT 234

Query: 301 GT 306
           GT
Sbjct: 235 GT 236


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 335 GPPQEMTRRGVPVIDAA 285
           GPP+E T   +PV +AA
Sbjct: 21  GPPEEETGSNLPVWEAA 37


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 335 GPPQEMTRRGVPVIDAA 285
           GPP+E T   +PV +AA
Sbjct: 21  GPPEEETGSNLPVWEAA 37


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 335 GPPQEMTRRGVPVIDAA 285
           GPP+E T   +PV +AA
Sbjct: 21  GPPEEETGSNLPVWEAA 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,968
Number of Sequences: 438
Number of extensions: 5519
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)