Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0325.Seq
(565 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30010.1 68415.m03651 expressed protein 31 0.53
At5g67300.1 68418.m08486 myb family transcription factor contain... 28 3.7
At5g53520.1 68418.m06651 oligopeptide transporter OPT family pro... 28 3.7
At1g10010.1 68414.m01129 amino acid permease, putative similar t... 28 3.7
At5g57670.1 68418.m07207 protein kinase family protein contains ... 28 5.0
At3g50950.2 68416.m05579 disease resistance protein (CC-NBS-LRR ... 27 6.5
At3g50950.1 68416.m05578 disease resistance protein (CC-NBS-LRR ... 27 6.5
At1g33170.1 68414.m04096 dehydration-responsive family protein s... 27 6.5
At5g15110.1 68418.m01770 pectate lyase family protein similar to... 27 8.7
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 27 8.7
At4g01525.1 68417.m00197 expressed protein 27 8.7
At3g43790.1 68416.m04678 transporter-related low similarity to S... 27 8.7
At3g19100.1 68416.m02427 calcium-dependent protein kinase, putat... 27 8.7
At2g33080.1 68415.m04056 leucine-rich repeat family protein cont... 27 8.7
At1g55050.1 68414.m06288 expressed protein ; expression supporte... 27 8.7
>At2g30010.1 68415.m03651 expressed protein
Length = 398
Score = 31.1 bits (67), Expect = 0.53
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = -3
Query: 215 SVSPTHTVCAPSSWASRVKSTGIKVVGR*CCGQLNSIPPEIHGPSSPTSA 66
SVSPTH P+ W SR K++ I G+ C GQ G + PTS+
Sbjct: 276 SVSPTHY--NPNEWTSRSKTSTITQGGKSCYGQTT----PFSGTTYPTSS 319
>At5g67300.1 68418.m08486 myb family transcription factor contains
PFAM profile: myb DNA binding domain PF00249
Length = 305
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 411 KRAVSAF--PIATGTYYKVDYSAGVDISRYKNVPVQPHI 521
KR+VSA P+ TG Y G D+S +P+ P +
Sbjct: 125 KRSVSAGSPPVVTGLYMSPGSPTGSDVSDSSTIPILPSV 163
>At5g53520.1 68418.m06651 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe},
oligopeptide transporter Opt1p [Candida albicans]
GI:2367386; contains Pfam profile PF03169: OPT
oligopeptide transporter protein
Length = 733
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 29 SAILFITMK--SLNLRWWGCWGRGFPVGLSLTGRNIIARPPLCPL 157
S +LF+ ++ + + WWG G G PV T + ++ CP+
Sbjct: 690 SVLLFLALQRSEIAIDWWGNSGEGCPVAKCPTAKGVVVHG--CPV 732
>At1g10010.1 68414.m01129 amino acid permease, putative similar to
amino acid permease I GI:22641 from [Arabidopsis
thaliana]; GC splice site at position 1256 is predicted
from alignment and not confirmed experimentally
Length = 475
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +1
Query: 187 AQTVWVGETEPMHGLQVMTGFTLALTGRRWKSPAASITGTPRRVISCGGPTRQ*KGGKGI 366
AQ WV T + ++T +T L ++SP SITGT R + G R GGK +
Sbjct: 56 AQLGWVAGTTVLVAFAIITYYTSTLLADCYRSP-DSITGT--RNYNYMGVVRSYLGGKKV 112
Query: 367 R 369
+
Sbjct: 113 Q 113
>At5g57670.1 68418.m07207 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 416
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 273 LEIASRVYNGNATPRHFLWWANPAVKGGEGHQSVFP 380
LEI + N T +H L WA PA++ G + V P
Sbjct: 297 LEIITGRRPVNPTQKHILLWAKPAMETGNTSELVDP 332
>At3g50950.2 68416.m05579 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 852
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 207 RNGADAWFTGDDRFHPRPDRAALEIASRVYNG 302
RNG A +G+D F +R +E+ + Y+G
Sbjct: 449 RNGRSATESGEDCFSGLTNRCLIEVVDKTYSG 480
>At3g50950.1 68416.m05578 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 852
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 207 RNGADAWFTGDDRFHPRPDRAALEIASRVYNG 302
RNG A +G+D F +R +E+ + Y+G
Sbjct: 449 RNGRSATESGEDCFSGLTNRCLIEVVDKTYSG 480
>At1g33170.1 68414.m04096 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 639
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = -3
Query: 386 IRREDALMPFPPFHCRVGPPQEMTRRGVPVIDAAGDFQRRPVRARVKPVITCKPCI 219
++R+ M F P Q RGVP I +R P AR + C C+
Sbjct: 250 LKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCL 305
>At5g15110.1 68418.m01770 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 472
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 510 GQAHFYSEKCPLQRSSPL--CSKCR*RWGKRRRPVCR 406
G+ + K P S+P+ C +CR W KRR+ + R
Sbjct: 107 GKGKWSKLKGPCTASNPIDKCWRCRSDWAKRRKKLTR 143
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor 3
large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/61 (24%), Positives = 22/61 (36%)
Frame = -2
Query: 438 RWGKRRRPVCRDQTPPLHPAGRRSDALPPLSLPGWPTTRNDAAWRSRYRRGWRFPAPPGQ 259
+W ++ V P RRS+ PP W + R A R+ PP +
Sbjct: 899 KWKRQTTEVSGPSAPTSSETDRRSNRGPPPGDDHWGSNRGAAQNTDRWTSNRERSGPPAE 958
Query: 258 G 256
G
Sbjct: 959 G 959
>At4g01525.1 68417.m00197 expressed protein
Length = 142
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 467 LRWSGHFSL*KCACPTSYMAEKSQYDFVGAW 559
L W G FSL +C+C + + +S YD + W
Sbjct: 28 LDWCG-FSLLRCSCGSDVLEVESCYDSLRLW 57
>At3g43790.1 68416.m04678 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 478
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 85 GPWISGGIEFNWPQHHRPTTFMPVD 159
GP GG+ F+W Q + TF+P D
Sbjct: 428 GP-AGGGVLFSWAQKRQDATFLPGD 451
>At3g19100.1 68416.m02427 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium/calmodulin-dependent
protein kinase CaMK3 [Nicotiana tabacum]
gi|16904226|gb|AAL30820; contains protein kinase domain,
Pfam:PF00069; contains serine/threonine protein kinase
domain, INTERPRO:IPR002290
Length = 599
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 120 AATSSPDHLYAR*FHPRSP*RRCTDGVGRR 209
+ TS+P AR FHP SP R D + RR
Sbjct: 76 SVTSTPLRQLARAFHPPSPARHIRDVLRRR 105
>At2g33080.1 68415.m04056 leucine-rich repeat family protein
contains leucine rich-repeat domain Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 740
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 258 PDRAALEIASRVYNGNATPRHFLWWANPAVKGGE 359
P+ EIA ++ G +PR+F+ W ++ E
Sbjct: 529 PELRIFEIADNMFTGTLSPRYFVNWKTSSLTVNE 562
>At1g55050.1 68414.m06288 expressed protein ; expression supported
by MPSS
Length = 914
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 318 DAAWRSRYRRGWRFPAPPGQGEGETCHHL 232
DA W RGWR P QG ++ H+
Sbjct: 321 DAVWPRLLHRGWRSELPKDQGYIKSKEHI 349
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,880,485
Number of Sequences: 28952
Number of extensions: 369458
Number of successful extensions: 1033
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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