Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0323X.Seq
         (483 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   1.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   3.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   3.4  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   4.5  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   4.5  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 247 QVSHEISVTGRLRHGSEGSC 188
           Q+S + SVT  L  GSE SC
Sbjct: 93  QISQQQSVTALLDTGSEVSC 112


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 23  KCTKGKTFNYKNKD*SGYYN 82
           + ++G+ +NY N     YYN
Sbjct: 343 RMSRGRQYNYPNPQQQYYYN 362


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 23  KCTKGKTFNYKNKD*SGYYN 82
           + ++G+ +NY N     YYN
Sbjct: 291 RMSRGRQYNYPNPQQQYYYN 310


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 153 FLKRITKTLYYGQLPSLPCLSLPVTEISCDTWSS 254
           FL+  T   YY    +LP ++ P ++ +C  +++
Sbjct: 26  FLQEKTTYEYYENNQALPPITYPPSDWNCPQYNA 59


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 153 FLKRITKTLYYGQLPSLPCLSLPVTEISCDTWSS 254
           FL+  T   YY    +LP ++ P ++ +C  +++
Sbjct: 17  FLQEKTTYEYYENNQALPPITYPPSDWNCPQYNA 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,405
Number of Sequences: 336
Number of extensions: 2286
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)