Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0323X.Seq
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   2.0  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    27   2.0  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    26   3.4  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    25   7.9  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   7.9  

>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 80  NVEYIKKTTGRVKVQDQGHG*S*RVFEAHYKDPILRAAAFTSVPQP 217
           N+   K T G V VQ +       +F  HYKD ILR  A   + +P
Sbjct: 670 NLAKKKSTAGFVLVQLRKLADHPMLFRIHYKDDILRQMAKAIMNEP 715


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 12  ICNVNVPREKHLTIRIKINRAIIMSNISKRRREGSR 119
           ICNV +P    ++I ++ N A  + N+S    + SR
Sbjct: 418 ICNVLIPLTDSMSIEVQGNSAAALGNLSSNVDDYSR 453


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 386 NYVAAAAPSELFLVSGMVGNKFLQD 460
           NY+       LFLV  M   KFLQD
Sbjct: 76  NYIPLLCGRRLFLVCLMAATKFLQD 100


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 216 LPVTEISCDTWSSHNAVVHCA 278
           +PVT+ +   WS    +VHC+
Sbjct: 170 IPVTQTTKKPWSMDENIVHCS 190


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 3   GVYICNVNVPREKHLTIRIKINRAIIMSNISKRRREGSRSKTK 131
           G  + +  +  E+ L  ++  +RAI +SN+S   RE   SKT+
Sbjct: 126 GEPVVDSEIEEEEDLASQLT-SRAISLSNLSLHGRESEPSKTE 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,968
Number of Sequences: 5004
Number of extensions: 38572
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)