Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0323X.Seq
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913... 35 0.039
10_08_0080 - 14707309-14707420,14707799-14707846,14708418-147085... 31 0.37
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670... 29 2.0
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 28 3.4
11_06_0365 - 22742886-22744223 28 4.5
11_06_0362 - 22723104-22724441 28 4.5
05_07_0258 - 28729620-28729782,28730193-28730339,28730808-287310... 28 4.5
02_04_0474 - 23202739-23203011,23203103-23203469,23203592-232039... 28 4.5
07_03_1162 + 24437396-24438652 27 6.0
02_04_0214 - 20976977-20977171,20977499-20977611,20978041-209781... 27 6.0
09_03_0143 - 12723640-12723935,12723959-12724310 27 7.9
07_03_1365 + 26052690-26052752,26055118-26055221,26055282-26055684 27 7.9
02_04_0349 + 22222091-22222639,22222718-22223695 27 7.9
>07_03_0100 +
13389899-13390219,13390723-13390841,13391220-13391315,
13391481-13391553,13392055-13392123
Length = 225
Score = 34.7 bits (76), Expect = 0.039
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = -2
Query: 437 PSQTQGRVQRVQPLQHN*GCAC*VSRGKGAPAVAHMGTHRLPGPYSPTNPRAVGAVNDRV 258
P Q+ RV +H C C R G+P++ + PGP+S T +N RV
Sbjct: 45 PPQSLHASSRVPAARHRIVCPC--RRRGGSPSLTRRSSPEKPGPFSQTRSPETEKMNKRV 102
Query: 257 VRR 249
RR
Sbjct: 103 ERR 105
>10_08_0080 -
14707309-14707420,14707799-14707846,14708418-14708543,
14708586-14708743
Length = 147
Score = 31.5 bits (68), Expect = 0.37
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 365 SRGKGAPAVAHMGTHRLPGPYSPTNPRAVGAVNDRVVRRPG 243
SR G+P++ + PGP+S T +N RV RR G
Sbjct: 53 SRRGGSPSLTRRSSPEKPGPFSQTRSPETEKMNKRVERRGG 93
>07_03_0151 -
14465479-14465675,14466280-14466401,14466934-14467081,
14467146-14467167,14467299-14467393,14467395-14467438,
14467750-14467841,14467911-14467982,14468188-14468229,
14468333-14468494,14468631-14468683,14468808-14468925,
14468974-14469150,14469573-14469639,14470195-14470273,
14473805-14473862,14474257-14474346,14474429-14474540,
14474649-14474912,14475361-14475463,14476200-14476278,
14476748-14476852
Length = 766
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 196 LHFRASACQSLRSHVIPGLLTTRSFTAPTARGLVGEYGPGSLCVPMCATAGAPLP 360
LH A +L S GL T S T+ G+VGE+ G+L + PLP
Sbjct: 302 LHLLARQGGTLTSTESIGLAVTGSSELATSNGIVGEF--GALALASAVAPSLPLP 354
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +3
Query: 168 TKTLYYGQLPSLPCLSLPVTEISCDTWSSHNAVVHCAD--CTRIGRRVWPGQPVCPHVRY 341
T+ L G+LP LPCL V++ + S AV AD C + + G P +
Sbjct: 1092 TQKLVDGKLPKLPCLQFFVSDNMIVSESVERAVSVLADSLCGVLLNTIIKGDPRIQEAKI 1151
Query: 342 CW 347
W
Sbjct: 1152 VW 1153
>11_06_0365 - 22742886-22744223
Length = 445
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 192 LPSLPCLSLPVTEISCDTWSSHNAVVHC 275
LPS LP +C+ +S +NAVVHC
Sbjct: 50 LPS-SAKQLPCLFYACEAYSPNNAVVHC 76
>11_06_0362 - 22723104-22724441
Length = 445
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 192 LPSLPCLSLPVTEISCDTWSSHNAVVHC 275
LPS LP +C+ +S +NAVVHC
Sbjct: 50 LPS-SAKQLPCLFYACEAYSPNNAVVHC 76
>05_07_0258 -
28729620-28729782,28730193-28730339,28730808-28731032,
28731148-28731178,28731424-28731940
Length = 360
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 241 IPGLLTTRSFTAPTARGLVGEYGPGSLCV--PMCATA 345
+PG TT S P A G G G GS CV P +TA
Sbjct: 70 MPGTQTTPSLANPVAAGGGGGGGGGSWCVASPSASTA 106
>02_04_0474 -
23202739-23203011,23203103-23203469,23203592-23203990,
23204060-23204397,23204558-23204782,23205025-23205073,
23205281-23205462
Length = 610
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 331 WGHTGCPGHTRRPIRV 284
WGHTGC GH RV
Sbjct: 459 WGHTGCLGHGDEEYRV 474
>07_03_1162 + 24437396-24438652
Length = 418
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 277 PTARGLVGEYGPGSLCVPMCATAGAPLPRE 366
P A L YG V +C AGAP+P +
Sbjct: 368 PLANELKRYYGKAPAVVELCVRAGAPVPAQ 397
>02_04_0214 -
20976977-20977171,20977499-20977611,20978041-20978158,
20978585-20978701,20978836-20978973,20979193-20979318,
20979827-20980015,20980539-20980863,20980977-20981134
Length = 492
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 211 SACQSLRSHVIPGLLTTRSFTAPTARGLVGEYG 309
+A +LRSH P +L +A RGL GE+G
Sbjct: 66 AAAAALRSHDPPVVLAKVDASADLNRGLAGEHG 98
>09_03_0143 - 12723640-12723935,12723959-12724310
Length = 215
Score = 27.1 bits (57), Expect = 7.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 279 DCTRIGRRVWPGQPVC 326
DC +G R WP P+C
Sbjct: 134 DCHHVGHRAWPVGPLC 149
>07_03_1365 + 26052690-26052752,26055118-26055221,26055282-26055684
Length = 189
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 167 YKDPILRAAAFTSVPQPASH*DLM*YL 247
YKD IL +SV QP S+ D+M YL
Sbjct: 90 YKDYILACLLISSVFQPMSYLDVMSYL 116
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 167 YKDPILRAAAFTSVPQPASH*DLM*YL 247
YKD IL +SV QP S+ D+M YL
Sbjct: 137 YKDYILACLLISSVFQPMSYLDVMSYL 163
>02_04_0349 + 22222091-22222639,22222718-22223695
Length = 508
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 257 QRGRSLRRLHADWSASMARA 316
++GR++R+ A+WS S ARA
Sbjct: 464 EKGRAMRKRAAEWSESAARA 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,819,175
Number of Sequences: 37544
Number of extensions: 297331
Number of successful extensions: 777
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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