Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0323X.Seq
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5253| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.040
SB_22415| Best HMM Match : TT_ORF2 (HMM E-Value=3.7)                   31   0.66 
SB_10873| Best HMM Match : Exo_endo_phos (HMM E-Value=0.068)           29   2.0  
SB_47907| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_37334| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_21016| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_20252| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)               27   8.1  

>SB_5253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 34.7 bits (76), Expect = 0.040
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 135 MGDHKEFLKRITKTLYYGQLPSLPCLSLPVT 227
           M DH+ F  R+ KTLYYG+       S PVT
Sbjct: 1   MADHRSFSNRLRKTLYYGEFADASLPSDPVT 31



 Score = 30.7 bits (66), Expect = 0.66
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 308 ARAACVSPCAXXXXXXXXXXXNKHNPNYVAAAAPSELFLVSGMVGNKFLQDDCEGDEV 481
           ++ A +SPCA                      + S++FL+S MV +K+L D+ E +EV
Sbjct: 53  SQRAKISPCALMMGLLYAERLRLKPTTSSKDLSSSDVFLISVMVASKYLYDEGEDEEV 110


>SB_22415| Best HMM Match : TT_ORF2 (HMM E-Value=3.7)
          Length = 483

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 201 LPCLSLPVTEISCDTWSSHNAVVHCADCTRIGRRVWP 311
           L CL+L     +  T ++H+A+ HC DC  +    WP
Sbjct: 385 LKCLTLTQATGASFTMTNHSALNHCFDCHPLWCACWP 421


>SB_10873| Best HMM Match : Exo_endo_phos (HMM E-Value=0.068)
          Length = 1142

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 24  NVPREKHLTIRIKINRAIIMSNISKRRREGSRSK 125
           N  R++ + I I++N+ + + N+SK    GS+ +
Sbjct: 521 NTTRQERINILIRMNQVMSVQNVSKEHSRGSKGR 554


>SB_47907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 172 RPYTTGSCLHFRASACQSLRSHVIPGLLTTRSFTA 276
           +PYT    LH+  +AC +L S  +P  +  +SFTA
Sbjct: 27  QPYTA---LHYPRAACTALHSPSLPLRMPIKSFTA 58


>SB_37334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
 Frame = +1

Query: 94  QKDDGKGQGPRP------RAWVIIKSF*SALQRPYTTGSCLHFRASACQSLRSHV 240
           Q+D   G G RP       AWV  K+  S     +     LH  A AC+S R HV
Sbjct: 17  QRDPHPGTGKRPCSDATDTAWVTAKNRLSVTY--FLESETLHVAADACRSGRRHV 69


>SB_21016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 479 PHRLHNRLVGIYYLPSQTQGRVQRVQ 402
           P R+ N  V +Y++  Q  GRVQR+Q
Sbjct: 267 PARVLNTKVSVYHVTYQLVGRVQRMQ 292


>SB_20252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 479 PHRLHNRLVGIYYLPSQTQGRVQRVQ 402
           P R+ N  V +Y++  Q  GRVQR+Q
Sbjct: 267 PARVLNTKVSVYHVTYQLVGRVQRMQ 292


>SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)
          Length = 1486

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 81   MSNISKRRREGSRSKTKGMGDHKEFLKRITKTLYYGQLPSLPCLSLPVT 227
            ++N S+R    SR +T+        +   T TL   + PSLPC + PVT
Sbjct: 1034 VANASRRASLPSRGRTRS----NPSVTTETSTLSKQKRPSLPCRAYPVT 1078


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,693,366
Number of Sequences: 59808
Number of extensions: 328229
Number of successful extensions: 760
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)