Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0323X.Seq
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93381-6|CAB07609.1|  724|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z83218-8|CAB05693.1|  724|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr...    27   7.1  
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase...    27   7.1  
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi...    27   7.1  
AF003142-3|AAB54188.1|  739|Caenorhabditis elegans Him-three par...    27   7.1  

>Z93381-6|CAB07609.1|  724|Caenorhabditis elegans Hypothetical
           protein C31A11.1 protein.
          Length = 724

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 131 LGLGP*PFPSSF*YIRHYNSPINLYSYS*MFF 36
           +G+GP  F SSF    +Y  P  L SY   FF
Sbjct: 629 IGVGPLHFYSSFQLFMYYAVPTTLLSYIFAFF 660


>Z83218-8|CAB05693.1|  724|Caenorhabditis elegans Hypothetical
           protein C31A11.1 protein.
          Length = 724

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 131 LGLGP*PFPSSF*YIRHYNSPINLYSYS*MFF 36
           +G+GP  F SSF    +Y  P  L SY   FF
Sbjct: 629 IGVGPLHFYSSFQLFMYYAVPTTLLSYIFAFF 660


>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
           protein ZK1067.1 protein.
          Length = 1323

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 267 VHCADCTRIGRRVWPGQPVCPHVRY 341
           + C  C+  GR V   + VC HV Y
Sbjct: 698 ISCKTCSSAGRNVVQNKCVCKHVEY 722


>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
           protein.
          Length = 1323

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 267 VHCADCTRIGRRVWPGQPVCPHVRY 341
           + C  C+  GR V   + VC HV Y
Sbjct: 698 ISCKTCSSAGRNVVQNKCVCKHVEY 722


>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
           kinase protein.
          Length = 1374

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 267 VHCADCTRIGRRVWPGQPVCPHVRY 341
           + C  C+  GR V   + VC HV Y
Sbjct: 749 ISCKTCSSAGRNVVQNKCVCKHVEY 773


>AF003142-3|AAB54188.1|  739|Caenorhabditis elegans Him-three
           paralog protein 3 protein.
          Length = 739

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 105 REGSRSKTKGMGDHKEFLKRITKTLYYGQLPSLP 206
           +E + S T+     K+F     K + YGQ P++P
Sbjct: 701 QEDTESSTQNQSTSKKFKPNPPKAMRYGQSPNMP 734


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,193,202
Number of Sequences: 27780
Number of extensions: 226969
Number of successful extensions: 614
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)