Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0323X.Seq
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ...    29   1.6  
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ...    29   1.6  
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ...    29   1.6  
At5g64800.1 68418.m08148 CLE21, putative CLAVATA3/ESR-Related 21...    28   3.8  
At1g43570.1 68414.m05001 hypothetical protein                          27   6.6  

>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM); similar to
           GB:AAC33496
          Length = 347

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 155 KLFMITHALGLGP*PFPSSF*YIRHYNSPINLYSYS*MFFPWYIYITNIY 6
           ++ M T   G GP P P    +  + + P+NL+ YS     +  + TN+Y
Sbjct: 112 RVMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLY 161


>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM); similar to
           GB:AAC33496
          Length = 242

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 155 KLFMITHALGLGP*PFPSSF*YIRHYNSPINLYSYS*MFFPWYIYITNIY 6
           ++ M T   G GP P P    +  + + P+NL+ YS     +  + TN+Y
Sbjct: 112 RVMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLY 161


>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM); similar to
           GB:AAC33496
          Length = 249

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 155 KLFMITHALGLGP*PFPSSF*YIRHYNSPINLYSYS*MFFPWYIYITNIY 6
           ++ M T   G GP P P    +  + + P+NL+ YS     +  + TN+Y
Sbjct: 112 RVMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLY 161


>At5g64800.1 68418.m08148 CLE21, putative CLAVATA3/ESR-Related 21
           (CLE21)
          Length = 106

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 81  MSNISKRRREGSRSKTKGMGDHKEFLKRITKT 176
           MSN +K RR  SR + K  GD +E  KR   T
Sbjct: 67  MSNFNKVRRRSSRFRRKTDGDEEEEEKRSIPT 98


>At1g43570.1 68414.m05001 hypothetical protein
          Length = 348

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 210 GTEVKAAARSIGSL*CASKTLYDHPCPWSWTLTLPVVF 97
           GTE K+    +  L  ++KTL+     +S T+T P+ F
Sbjct: 308 GTECKSGTAKLTLLAFSAKTLWKQEITYSSTVTTPIKF 345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,611,752
Number of Sequences: 28952
Number of extensions: 214782
Number of successful extensions: 560
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)