Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0322.Seq
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    27   2.4  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    27   4.2  
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    26   5.6  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   9.8  

>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -1

Query: 300 IHQGMYLFLRLQHPDLMTDVI 238
           ++QG++   R++HPD+ TDV+
Sbjct: 252 LYQGIHEETRMEHPDVCTDVL 272


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = -2

Query: 161 FLNIGSSNSLHGGSGFTMTLLFFFGKFNSEYNIWKEFKVSIDGSSSS 21
           FLN  SS  +    G T  LLF   KF +  N     K+S D SS S
Sbjct: 184 FLNGTSSPYIDAIYGSTDLLLFGVKKFITSMNTSSNVKISSDPSSPS 230


>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +2

Query: 626 FVQPACLWTKEDITELESFATVTGWGVLQEGSRNISAELQAAVVDL 763
           F+    +W   + T LE+  T   WG  QE    ++ EL     ++
Sbjct: 331 FLPGTLMWGATNGTSLEAARTSKNWGTRQERDVKLAQELMRTCYEM 376


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 408 HCSEAPLKDNPDISDPIPKI 467
           H  EAP ++N D++D  PKI
Sbjct: 917 HGYEAPTRENLDVNDDRPKI 936


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,702,581
Number of Sequences: 5004
Number of extensions: 84714
Number of successful extensions: 250
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)