Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0322.Seq
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123 33 0.36
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653... 29 3.4
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821... 29 4.4
01_01_0415 - 3123807-3123940,3124002-3124200 29 4.4
08_02_0610 + 19307537-19308011,19308187-19310846 28 7.8
06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312 28 7.8
06_03_1150 + 28022633-28023374,28023501-28023565 28 7.8
04_03_0357 + 14852584-14853058,14853116-14855754 28 7.8
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 28 7.8
>02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123
Length = 422
Score = 32.7 bits (71), Expect = 0.36
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 349 SEFLSHGDH-PTAPICGNSPGNVSLPPTAASGFNDRCNLQCLFAPLRLISKFV 194
S+ SHG P+ P + PG V + AAS R +C F+P RL+S+ V
Sbjct: 294 SKLKSHGKLLPSRPFTVSPPGKVQVAAAAASVSKTR---RCTFSPSRLVSRLV 343
>07_03_1284 +
25463476-25463557,25465088-25465220,25465307-25465378,
25465476-25465544,25465629-25465700,25465792-25465860,
25466155-25466220,25466299-25466364,25466452-25466786,
25466931-25467214,25467796-25468067,25468152-25468287,
25468625-25468755,25468890-25469046,25469185-25469327,
25470105-25470190,25471530-25472962,25474563-25474712,
25475221-25475322,25475467-25475568
Length = 1319
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 49 LNSFQILYSELNFPKKNNRVIVKPDPPCKEFELPIFRKGSRISETK 186
+N+ +LY+ +N P + + + PC + L I GSR++ K
Sbjct: 28 VNALNVLYTSMNSPSQLTNWVSQNGDPCGQSWLGITCSGSRVTAIK 73
>10_08_0883 +
21279913-21280235,21281066-21281327,21281998-21282199,
21282289-21282436,21282541-21283084
Length = 492
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -1
Query: 438 DYPSAVLLNSEQQSVRKMD*L---GSFRI*IRNPNFYPTGTIQQRPYVEIHQGM 286
DY V+++S+ ++K D L G F NP ++ TG +P +++ +GM
Sbjct: 151 DYERVVMIDSDNIFLQKTDELFQCGQFCAVFINPCYFHTGLFVLQPSMDVFKGM 204
>01_01_0415 - 3123807-3123940,3124002-3124200
Length = 110
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 703 SFTRR*QEHLSRITSSGSGLIDSDECETLLQP 798
SFTRR + LSR T SG D D L++P
Sbjct: 64 SFTRRKKGGLSRTTESGKERADDDTGAVLIEP 95
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 149 GSSNSLHGGSG-FTMTLLFFFGKFNSEYNIWKEFKVSIDGSSSSVLI 12
G++ GGSG +T+ L F + Y+ WKE + GSS+++ I
Sbjct: 5 GNAKPGGGGSGAYTINLDNFSKRLKVFYDHWKEHNSDLWGSSNAIAI 51
>06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312
Length = 270
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 322 PTAPICGNSPGNVSLPPTAASGF 254
P PI G+S G + PP+A SGF
Sbjct: 79 PLIPIGGSSGGGGAAPPSAGSGF 101
>06_03_1150 + 28022633-28023374,28023501-28023565
Length = 268
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 322 PTAPICGNSPGNVSLPPTAASGF 254
P PI G+S G + PP+A SGF
Sbjct: 79 PLIPIGGSSGGGGAAPPSAGSGF 101
>04_03_0357 + 14852584-14853058,14853116-14855754
Length = 1037
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 149 GSSNSLHGGSG-FTMTLLFFFGKFNSEYNIWKEFKVSIDGSSSSVLI 12
G++ GGSG +T+ L F + Y+ WKE + GSS+++ I
Sbjct: 5 GNAKPGGGGSGAYTINLDNFSKRLKVFYDHWKEHNSDLWGSSNAIAI 51
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 666 RNWNLSPPSPAGEFYKKVAGTSQPNYKQ 749
R WNLS P P + ++P YKQ
Sbjct: 534 RGWNLSSPGPIDNIMRSTLIEAEPLYKQ 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,509,411
Number of Sequences: 37544
Number of extensions: 526954
Number of successful extensions: 1375
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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