Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0322.Seq
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    38   8e-05
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 38.3 bits (85), Expect = 8e-05
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
 Frame = +2

Query: 530 IKAIYVHPDY----KSPTKYNDVALLELEWGINYSYFVQPACLWTKEDITELE-SFATVT 694
           I  + +HP Y    K   + ND+ALL+ E  I +   V PACL  +  +     S  TV 
Sbjct: 236 INKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVL 295

Query: 695 GWGVLQEGSRNISAELQAAVVDL*IQMNA-KHYCNL 799
           GWG        +S  LQ   +++  Q+   K+Y N+
Sbjct: 296 GWGHTSFNGM-LSHILQKTTLNMLTQVECYKYYGNI 330



 Score = 37.9 bits (84), Expect = 1e-04
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +3

Query: 255 NPDAAVGGRDTFPGEFPHMGAVGWSPWDKNSDYVFKCGSSLISPFFLLTAAHC 413
           NP   VGG +T   EFP M  +      +  +    CG+++IS  ++LTAAHC
Sbjct: 157 NPSRIVGGTNTGINEFPMMAGI-----KRTYEPGMICGATIISKRYVLTAAHC 204


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = -3

Query: 373  ELPHLNT*SEFLSHGDHPTAPICGNSPGNVSLPPTAASGFNDRCNLQCLFAPLRLISKFV 194
            +L H+   S+F+ HG   T+          SLP     G + R +L+ L  P+ +     
Sbjct: 1807 KLKHIRAVSDFIYHGTSSTSSDISPMSEQKSLP---RRGRSSRSSLRTLLPPISVAETTF 1863

Query: 193  LG 188
            +G
Sbjct: 1864 VG 1865


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = -3

Query: 373  ELPHLNT*SEFLSHGDHPTAPICGNSPGNVSLPPTAASGFNDRCNLQCLFAPLRLISKFV 194
            +L H+   S+F+ HG   T+          SLP     G + R +L+ L  P+ +     
Sbjct: 1803 KLKHIRAVSDFIYHGTSSTSSDISPMSEQKSLP---RRGRSSRSSLRTLLPPISVAETTF 1859

Query: 193  LG 188
            +G
Sbjct: 1860 VG 1861


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 148  PIFRKGSRISETKCREQIWKLNAMERIDTEDYI 246
            P +R+   ++ET C +   +   +E I   DY+
Sbjct: 963  PAYRRRLNVNETVCSDYFSQGGVIESIMVSDYL 995


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,694
Number of Sequences: 438
Number of extensions: 6138
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)