Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0322.Seq
(819 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29870.1 68414.m03651 tRNA synthetase class II (G, H, P and S... 31 0.70
At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical ... 29 2.8
At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical ... 29 2.8
At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical ... 29 2.8
At2g18690.1 68415.m02177 expressed protein 29 2.8
At2g06200.1 68415.m00682 expressed protein 29 2.8
At3g59960.1 68416.m06692 SET domain-containing protein low simil... 29 3.7
At4g10600.1 68417.m01734 PHD finger family protein contains Pfam... 28 8.6
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 28 8.6
At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase ... 28 8.6
>At1g29870.1 68414.m03651 tRNA synthetase class II (G, H, P and S)
family protein similar to SP|O23627 Glycyl-tRNA
synthetase (EC 6.1.1.14) (Glycine--tRNA ligase) (GlyRS)
{Arabidopsis thaliana}; contains Pfam profile PF00587:
tRNA synthetase class II core domain (G, H, P, S and T);
contains non-consensus TA acceptor splice site at intron
4
Length = 463
Score = 31.5 bits (68), Expect = 0.70
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +2
Query: 542 YVHPDYKSPTKYNDVALLEL 601
+VHP++KS +K++DVA LEL
Sbjct: 294 FVHPEHKSHSKFSDVAKLEL 313
>At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical to
protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
Length = 453
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 288 FPGEFPHMGAVGWSPWDKNSDYVFKCGSSLISPFFLLT 401
F P G+ W P DK+ YVF G +L + +L+
Sbjct: 68 FYNGLPRQGSPPWRPDDKDGHYVFVVGDTLTPRYQILS 105
>At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical to
protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
Length = 467
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 288 FPGEFPHMGAVGWSPWDKNSDYVFKCGSSLISPFFLLT 401
F P G+ W P DK+ YVF G +L + +L+
Sbjct: 82 FYNGLPRQGSPPWRPDDKDGHYVFVVGDTLTPRYQILS 119
>At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical to
protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
Length = 467
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 288 FPGEFPHMGAVGWSPWDKNSDYVFKCGSSLISPFFLLT 401
F P G+ W P DK+ YVF G +L + +L+
Sbjct: 82 FYNGLPRQGSPPWRPDDKDGHYVFVVGDTLTPRYQILS 119
>At2g18690.1 68415.m02177 expressed protein
Length = 322
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 345 SDYVFKCGSSLISPFFLLTAAHCSEAPLKD-NPDISDPIPKIVRLSYK 485
S Y+F SS+I+ F +L H S LKD N +I D P + S+K
Sbjct: 94 SSYIFAAVSSIINLFSVLVIVHASAITLKDENFNIKD-FPVLSLKSWK 140
>At2g06200.1 68415.m00682 expressed protein
Length = 244
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2
Query: 188 HLVSLIREPFLNIGSSNSLHGGSGFTMTLLFFFG 87
HL+ LI+ PFL SS+S S F+ TL FG
Sbjct: 34 HLLFLIKRPFLFSSSSSSSSSSSFFSPTLSPHFG 67
>At3g59960.1 68416.m06692 SET domain-containing protein low
similarity to huntingtin interacting protein 1 [Homo
sapiens] GI:12697196; contains Pfam profile PF00856: SET
domain
Length = 352
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 163 GSRISETKCREQIWKLNAMERIDTEDYIC 249
G I + C E++WKLN +++T Y+C
Sbjct: 142 GEVIDDKICEERLWKLN--HKVETNFYLC 168
>At4g10600.1 68417.m01734 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 237
Score = 27.9 bits (59), Expect = 8.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 751 GSGLIDSDECETLLQPWCSR 810
G ++D DEC + WCSR
Sbjct: 25 GKEMVDCDECGVWVHTWCSR 44
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -3
Query: 448 DISGLSFSGASEQ*AAVSKKNGLIRELPHLNT*SEFLSHGDHPTAPICGNSPGNVS 281
D S ++ + ++ SKK GLI++L + S P+ G SPG +S
Sbjct: 422 DFDNASMDSSTSRFSSFSKKPGLIQKLKKWGKSKDDSSVQSSPSRSFYGGSPGRLS 477
>At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase
(PGS1) identical to phosphatidylglycerolphosphate
synthase GI:13365519 from [Arabidopsis thaliana]
Length = 296
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = +1
Query: 670 IGIFRHRHRLGSFTRR*QEHLSRITS------SGSGLIDSDE 777
I I RH+HRL F+ SR TS SG G +DSD+
Sbjct: 50 IQISRHQHRLSYFSSSSSSEQSRPTSSSRNSFSGHGQLDSDD 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,187,026
Number of Sequences: 28952
Number of extensions: 434461
Number of successful extensions: 1158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -