Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0320.Seq
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom...    27   1.7  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   2.2  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    26   2.9  
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    26   3.9  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   3.9  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   5.1  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   6.8  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.0  

>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 161

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 343 LDVVAVSQAPSPESNPDSP-LPVTTMVVAETTIEK 444
           +D+VA +Q       PD+   P+ T VVA+TT+ K
Sbjct: 1   MDIVAETQIEEESLIPDATSTPLETEVVADTTLRK 35


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 421 LPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVTKN 284
           +P +S V  +   IPER+  + L  P       + H    EVV +N
Sbjct: 757 VPCISGVMLHSKIIPERKNSEFLSFPTSQQECLLVHDNQAEVVVQN 802


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 23/83 (27%), Positives = 32/83 (38%)
 Frame = +3

Query: 249 SDTRPRKSPVSLFFVTTSPCREWVICAPAAFLGCGSRFSGSLSGIEP*FPVTRDNHGSRR 428
           +D  P  S      +TT   ++ +    A  L  G+RF G+L G    F    D   S R
Sbjct: 418 ADHGPCVSGAMNTIITTRAGKDLISSLVAGLLTIGTRFGGALDGAAQEFSKAYDAGLSPR 477

Query: 429 NYHRKVDKGRHLKDASPVLDHAI 497
            +   VD  R      P + H I
Sbjct: 478 AF---VDSCRKANKLIPGIGHRI 497


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 472 ASFKCLPLSTFRW*FLRLPWLSRVTGNQGS 383
           AS KCLP S +    LR P L  +T  + S
Sbjct: 2   ASPKCLPESNYSTSHLRFPRLQSITSKKNS 31


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 341 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 439
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 427 LRLPWLSRVTGNQGSIPEREPEKRLP 350
           LRL +L +   NQ S  E++ EKR+P
Sbjct: 283 LRLQFLIQQRNNQSSNEEQKQEKRVP 308


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 343 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIE 441
           L ++  S+   P + PD P   T+  V+ TT+E
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVE 454


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 112 AAHKCNYELFNRNNFSIRYWSWNYR 186
           AA KC +E      FSI + S+N++
Sbjct: 73  AASKCEFEKIWSTTFSISFLSFNFK 97


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 264 RKSPVSLFFVTTSPCREWVICAPAAFL 344
           +KS +SL F+T SPC  + IC+  A L
Sbjct: 50  QKSNISLPFLTLSPC-SFTICSLRARL 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,849
Number of Sequences: 5004
Number of extensions: 40075
Number of successful extensions: 95
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)