Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0320.Seq
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0861 + 8153108-8153266,8154633-8155136                           31   0.73 
09_01_0019 + 403078-404211                                             31   0.73 
06_01_0450 + 3185342-3185645,3185761-3185837,3185948-3186028,318...    29   2.2  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   5.2  
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    27   6.8  
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938...    27   9.0  
09_02_0334 - 7374974-7375032,7375370-7375586                           27   9.0  

>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +1

Query: 250 PIRGLVRVPYRYFSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVV 423
           P   L   P    SS  P    G   RL  S  +VA+ + P P S+P  D P   TT+ +
Sbjct: 86  PSSQLRAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVAL 145

Query: 424 AETTIEKL 447
            E    +L
Sbjct: 146 IELDDRRL 153


>09_01_0019 + 403078-404211
          Length = 377

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 398 GESGFDSGEGA*ETATTSKEGSRRANYPLPARGGSDEK*RYG 273
           G S  DSG GA ++A   K  SRR  +      GSD   R+G
Sbjct: 321 GASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSDGDERHG 362


>06_01_0450 +
           3185342-3185645,3185761-3185837,3185948-3186028,
           3186508-3186636,3186765-3186851,3186962-3187015,
           3187432-3187522,3187615-3187685,3187770-3187839,
           3187988-3188040,3188132-3188225,3188569-3188666,
           3190126-3190209
          Length = 430

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 249 SDTRPRKSPVSLFFVTTSPCREWV 320
           +DT P++ PV +F  ++  C+EW+
Sbjct: 169 NDTTPKRKPVIVFLHSSYKCKEWL 192


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 145 RNNFSIRYWSWNYRGC 192
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 337 PSLDVVAVSQAPSPESNPDSPLP 405
           P LD   ++Q PSP +NP  P P
Sbjct: 55  PPLDEETLAQFPSPPTNPSPPPP 77


>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
            9387180-9387325,9387416-9387572,9387720-9387778,
            9388204-9388360,9389001-9389150,9389280-9389416,
            9390071-9390217,9390292-9390393,9390742-9390799,
            9391997-9392034,9392124-9392250,9392320-9392493,
            9393125-9393256,9393940-9394049,9394752-9394812,
            9395036-9395213,9395326-9395531,9395796-9395915,
            9396496-9396594,9396983-9397204,9397482-9397621,
            9397741-9397852,9398021-9398071,9398151-9398240,
            9398397-9398567,9398663-9398815,9399774-9399950,
            9400045-9400182,9400295-9400365,9400739-9400838,
            9401324-9401380,9401469-9401525,9401619-9401699,
            9401782-9401864,9401975-9402110
          Length = 1632

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +1

Query: 1    EHRDRILILNRRFLERRLTDDMLRKRVSITADACTDSAAHKCNYELFNRNNFSIRY 168
            EH D+ L+L R+  +      MLR    +TA+A  +++  K   E  ++NN S+ Y
Sbjct: 1055 EH-DKNLLLQRQLDDSLREITMLRSSKIMTAEAERENSNLKNLVESLSKNNSSLEY 1109


>09_02_0334 - 7374974-7375032,7375370-7375586
          Length = 91

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +3

Query: 309 REWV---ICAPAAFLGCGSRFSGSLSGIEP*FPVTRDNHGSRRNYHRKVDKGRHLKDASP 479
           R W+   +CAP A +    R S ++   +P  P +R +    +   R+ D G    DAS 
Sbjct: 17  RRWIRLPLCAPCARMQLRRRGSSAVDAPDPAPPSSRVDPAWVKTMGRRQDGGNLHGDASR 76

Query: 480 VLDHAICKSYQ 512
            L   +  +YQ
Sbjct: 77  HLAKKLQSTYQ 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,098,607
Number of Sequences: 37544
Number of extensions: 309983
Number of successful extensions: 938
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)