Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0320.Seq
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   5e-04
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.035
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.00 
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   3.0  
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   5.3  
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_54812| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   7.0  
SB_49692| Best HMM Match : FGF (HMM E-Value=0.016)                     27   9.3  
SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_58532| Best HMM Match : Vicilin_N (HMM E-Value=0.88)                27   9.3  
SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)                   27   9.3  
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)                    27   9.3  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +1

Query: 346 DVVAVSQAPSPESNPDSPLPVTTM 417
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +1

Query: 355 AVSQAPSPESNPDSPLPVTTM 417
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 356 PFLRLPLRNRTLIPRYP 406
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 264 EASYRNEYTLNILTRNNWRASLXXXXXXXXXXXAYTKIVAVKKL 133
           + + R    ++++ R +WRASL           AY K+VAVKKL
Sbjct: 47  QTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKL 90


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 124 CNYELFNRNNFSIRYWSWNYRGCWH 198
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 337 PSLDVVAVSQAPSPESNPDSPLP 405
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -1

Query: 222 RNNWRASLXXXXXXXXXXXAYTKIVAVKKL 133
           R +WRASL           AY K+VAVKKL
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKL 43


>SB_54812| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 392

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 25  LNRRFLERR---LTDDMLRKRVSITADACTDSAAHKCNYELFNRNNFSI 162
           L  R+L+R    + +D L K+     D   DS    C++  FNR++  I
Sbjct: 341 LPNRYLQRMHKSVLNDRLAKKTGKRPDTEVDSKRSNCSHATFNRDSLKI 389


>SB_49692| Best HMM Match : FGF (HMM E-Value=0.016)
          Length = 168

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 408 DNHGSRRNYHRKVDKGRHLKDASPVLDHAICKSYQ 512
           +  G+RRN H+ +++  H K+A  VL     KSYQ
Sbjct: 110 EGQGARRNAHQAINRKGHTKNALRVL--PTHKSYQ 142


>SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 397 GNQGSIPEREPEKRLPHPRKAA 332
           GN+GS  + E EK LP P K A
Sbjct: 52  GNEGSEGDGEKEKMLPSPEKKA 73


>SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +1

Query: 370 PSPESNPDSPLPVTTMVVAETTIEKLIKADI*KMRR 477
           P+P S+P  P+P  T+ +  ++  + + ++  K+ R
Sbjct: 406 PAPPSSPPPPIPTATVTITSSSSMEKVSSETRKLPR 441


>SB_58532| Best HMM Match : Vicilin_N (HMM E-Value=0.88)
          Length = 234

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 409 SRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVTKNNDT 275
           +RVT NQ S      ++     RK   AQ+T  +    VT+N ++
Sbjct: 177 ARVTRNQESARVTRKQESARVTRKQVSAQVTRKQESARVTRNQES 221


>SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)
          Length = 1105

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 403 PVTTMVVAETTIEKLIKADI*K 468
           P TT VVA +T+ KLI+A I K
Sbjct: 253 PPTTAVVASSTLHKLIEASITK 274


>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
          Length = 763

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 403 PVTTMVVAETTIEKLIKADI*K 468
           P TT VVA +T+ KLI+A I K
Sbjct: 116 PPTTAVVASSTLHKLIEASITK 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,012,512
Number of Sequences: 59808
Number of extensions: 334683
Number of successful extensions: 937
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)