Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0320.Seq
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z29561-4|CAD91697.1|  498|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z29561-3|CAD54153.1|  846|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z29561-2|CAD54152.1|  882|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z29561-1|CAA82667.2|  861|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U73679-1|AAC67305.1|  861|Caenorhabditis elegans YNK1-a protein.       29   1.5  
Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z81080-2|CAD56584.1|  358|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ...    28   3.5  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   4.6  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p...    27   8.0  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    27   8.0  

>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +1

Query: 331 LLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIEKLIKADI*KMRRRYLTMRSAKVT 510
           +L S+ +V  +  P  E+  D P+ +  ++  E   E+L++A+I      Y+T  + K  
Sbjct: 468 ILKSMKLVEATMMPQVENPEDHPVTLVGLITLEDITEELLQAEITDETDCYVTDDAQKKR 527

Query: 511 R 513
           R
Sbjct: 528 R 528


>Z29561-4|CAD91697.1|  498|Caenorhabditis elegans Hypothetical
           protein R10E12.1d protein.
          Length = 498

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 313 SG*FARLLPSLDVVA--VSQAPSPESNPDSPLPVTTMVVAETTIEKLIKADI*KMRRRYL 486
           +G FARL    DVV   V Q P+P+  PD+   ++ ++ A+      IK    KM+   +
Sbjct: 159 AGVFARLR---DVVLGMVQQEPTPDLMPDTLAALSALMTAQAQEAIYIKGHKDKMKATSM 215

Query: 487 TMRSAKVTRF 516
              SA+V  F
Sbjct: 216 VKISAQVAEF 225


>Z29561-3|CAD54153.1|  846|Caenorhabditis elegans Hypothetical
           protein R10E12.1c protein.
          Length = 846

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 313 SG*FARLLPSLDVVA--VSQAPSPESNPDSPLPVTTMVVAETTIEKLIKADI*KMRRRYL 486
           +G FARL    DVV   V Q P+P+  PD+   ++ ++ A+      IK    KM+   +
Sbjct: 159 AGVFARLR---DVVLGMVQQEPTPDLMPDTLAALSALMTAQAQEAIYIKGHKDKMKATSM 215

Query: 487 TMRSAKVTRF 516
              SA+V  F
Sbjct: 216 VKISAQVAEF 225


>Z29561-2|CAD54152.1|  882|Caenorhabditis elegans Hypothetical
           protein R10E12.1b protein.
          Length = 882

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 313 SG*FARLLPSLDVVA--VSQAPSPESNPDSPLPVTTMVVAETTIEKLIKADI*KMRRRYL 486
           +G FARL    DVV   V Q P+P+  PD+   ++ ++ A+      IK    KM+   +
Sbjct: 159 AGVFARLR---DVVLGMVQQEPTPDLMPDTLAALSALMTAQAQEAIYIKGHKDKMKATSM 215

Query: 487 TMRSAKVTRF 516
              SA+V  F
Sbjct: 216 VKISAQVAEF 225


>Z29561-1|CAA82667.2|  861|Caenorhabditis elegans Hypothetical
           protein R10E12.1a protein.
          Length = 861

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 313 SG*FARLLPSLDVVA--VSQAPSPESNPDSPLPVTTMVVAETTIEKLIKADI*KMRRRYL 486
           +G FARL    DVV   V Q P+P+  PD+   ++ ++ A+      IK    KM+   +
Sbjct: 159 AGVFARLR---DVVLGMVQQEPTPDLMPDTLAALSALMTAQAQEAIYIKGHKDKMKATSM 215

Query: 487 TMRSAKVTRF 516
              SA+V  F
Sbjct: 216 VKISAQVAEF 225


>U73679-1|AAC67305.1|  861|Caenorhabditis elegans YNK1-a protein.
          Length = 861

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 313 SG*FARLLPSLDVVA--VSQAPSPESNPDSPLPVTTMVVAETTIEKLIKADI*KMRRRYL 486
           +G FARL    DVV   V Q P+P+  PD+   ++ ++ A+      IK    KM+   +
Sbjct: 159 AGVFARLR---DVVLGMVQQEPTPDLMPDTLAALSALMTAQAQEAIYIKGHKDKMKATSM 215

Query: 487 TMRSAKVTRF 516
              SA+V  F
Sbjct: 216 VKISAQVAEF 225


>Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 405 RDNHGSRRNYHRKVDKGRHLKDASP 479
           RDN+  RR+ HR  D+ R   D SP
Sbjct: 396 RDNNRDRRDNHRDSDRDRRRHDRSP 420


>Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 405 RDNHGSRRNYHRKVDKGRHLKDASP 479
           RDN+  RR+ HR  D+ R   D SP
Sbjct: 396 RDNNRDRRDNHRDSDRDRRRHDRSP 420


>Z81080-2|CAD56584.1|  358|Caenorhabditis elegans Hypothetical
           protein F39H2.2b protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 405 RDNHGSRRNYHRKVDKGRHLKDASP 479
           RDN+  RR+ HR  D+ R   D SP
Sbjct: 327 RDNNRDRRDNHRDSDRDRRRHDRSP 351


>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
           protein Y39A1C.2 protein.
          Length = 1066

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 307 HGEVVTKNNDTGLLRGLVSE*VHFKYFNEEQLEGK 203
           + E +    D  LL  L++  VHF Y N++ LE K
Sbjct: 286 NAEEIETGMDVRLLINLLANLVHFAYINDKTLESK 320


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 334 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 438
           +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 317 GNLRACCLPWMW*PFLRLPLR 379
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 151 CCG*KARSCICAPRCRC 101
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
           protein T05C12.10 protein.
          Length = 1169

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 498 RSHGQVPATHLSNVC-LYQLFDGS 430
           RSH  +P TH+ N C +Y+L DGS
Sbjct: 99  RSHHSIP-THIGNDCFIYELPDGS 121


>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
           protein T05C12.10 protein.
          Length = 1169

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 498 RSHGQVPATHLSNVC-LYQLFDGS 430
           RSH  +P TH+ N C +Y+L DGS
Sbjct: 99  RSHHSIP-THIGNDCFIYELPDGS 121


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +1

Query: 274 PYRYFSSLPPRAGSG*FARLLPSLDVVAV----SQAPSPESNPDSPLPVTTMVVAETTIE 441
           P  YF  L  R GSG  + ++  L VVAV      AP+    P S    T+ V  +T  +
Sbjct: 38  PAAYFRDLENRHGSGASSPIVGGLSVVAVPITQRHAPTAGLAPISDDISTSKVSLDTENQ 97

Query: 442 KLIKADI*KMRRRYLTMRSAKVTRFI 519
           +L   D  K+    L+  + +   F+
Sbjct: 98  QLNNEDSDKISGSALSRNTPRQASFM 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,566,491
Number of Sequences: 27780
Number of extensions: 239560
Number of successful extensions: 769
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)