Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0319.Seq
         (806 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   1.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   3.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   3.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.0  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   8.7  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 636  WNLCSKFVFYFV*YGS--EISNEHRIPIRVVFILG**IYIMSFCIIFTKEI 782
            WN+    V+ F+      E +++ RI + +  I+   I I+S CIIFT+ I
Sbjct: 1125 WNVLLNCVYLFLCGFCVYEFASDERIKLVIKAII---IMILSGCIIFTEGI 1172


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 96   KARDDWKIIRTLSEVVGERLPYDNQTRSTARMSEITPXL 212
            ++RD  KI+  L ++ G    Y++QT     M +    L
Sbjct: 1337 RSRDPIKIVADLQKLKGINNEYEDQTEVPVEMRKTVSNL 1375


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 96   KARDDWKIIRTLSEVVGERLPYDNQTRSTARMSEITPXL 212
            ++RD  KI+  L ++ G    Y++QT     M +    L
Sbjct: 1337 RSRDPIKIVADLQKLKGINNEYEDQTEVPVEMRKTVSNL 1375


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 515 LRAAINDYVKISPSTAFIYLLSVI 586
           LRA +++  K  P T F  LLSV+
Sbjct: 488 LRAYVDNRRKPKPGTIFAKLLSVL 511


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 566 IYLLSVIFFLDLVRLKIYSWQLSLEFVFKI 655
           +YL +   F+ ++ LK + W    E + K+
Sbjct: 76  LYLNAYHVFVTMMTLKRHKWSTLFEILLKL 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,831
Number of Sequences: 336
Number of extensions: 3700
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)