Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0319.Seq
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   4.1  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   5.5  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   7.2  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    25   9.6  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   9.6  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 572 LLSVIFFLDLVR--LKIYSWQLSLEFVFKICFLFCL 673
           LLS+++  DL    L  Y W + +  ++ + + FCL
Sbjct: 560 LLSLLYLTDLSLFFLDTYLWYILISTIYSLAYAFCL 595


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 610 KNLFLATFIGICVQNLFFILFNMVRK 687
           +++FLA FIGI     F +  +MVRK
Sbjct: 709 QSIFLAWFIGITFMFEFAVFISMVRK 734


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 693  WKFPNHIKQNKKQILNTN 640
            W FP+H  +N +QI +TN
Sbjct: 1014 WAFPHHKAENYEQISDTN 1031


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 169 WLSYGSRSPTTSDSVRMIFQSSLAFPCGDTARSV 68
           +LS+G  S    DSV++I   SL  P GD   S+
Sbjct: 32  YLSWGQHSILEQDSVQLISHQSL-LPAGDNLISL 64


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 263 LAQSLQKSLSGKLDVKLKQLEDYFMTDPIS 352
           L + +QK+LS KLD +L++   Y M D IS
Sbjct: 175 LFKKMQKNLSRKLDNELERNLVYSMNDLIS 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,664
Number of Sequences: 5004
Number of extensions: 62008
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)