Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0319.Seq
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0903 - 28652447-28653346,28653890-28654056,28654075-286542...    66   3e-11
09_04_0506 - 18188785-18190599                                         32   0.47 
12_01_0556 - 4514686-4514868,4515168-4515290,4515381-4515617,451...    30   2.5  
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621...    29   4.4  
01_04_0086 + 15916555-15916905,15917236-15917262                       29   4.4  
07_01_0719 + 5495271-5495726,5495894-5496949                           29   5.8  

>03_05_0903 -
           28652447-28653346,28653890-28654056,28654075-28654264,
           28654916-28655210,28655514-28655760,28656017-28656443
          Length = 741

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 32/60 (53%), Positives = 39/60 (65%)
 Frame = +3

Query: 36  TYVNAEGRAQQTLLAVSPXGKARDDWKIIRTLSEVVGERLPYDNQTRSTARMSEITPXLV 215
           TY N EG  Q T+ AV   G ARDDWKI+R LSEV G +LPYD+ +    R+S + P LV
Sbjct: 625 TYENTEGCTQWTIPAVPTVGDARDDWKILRALSEVAGAQLPYDSLSGVRDRISMVAPNLV 684



 Score = 31.9 bits (69), Expect = 0.62
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = +2

Query: 320 LEDYFMTDPISRASPTMAKCIQAVIKQ 400
           +E+++MTD I+RAS  MA+C   ++K+
Sbjct: 715 VENFYMTDAITRASKIMAQCSATLLKK 741



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +3

Query: 3   NIIDLCPVGALT 38
           N+ID+CPVGALT
Sbjct: 265 NVIDICPVGALT 276


>09_04_0506 - 18188785-18190599
          Length = 604

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
 Frame = -1

Query: 275 GSVPEPSLREXXXXXXXXVGDEXGGDLAHARGGPRLVVVREP------LAHHFRQRPNDL 114
           G  P+PS+           GD+   D  +  GG      R P       +   R+R  DL
Sbjct: 444 GMWPDPSMGGWGGEEQSSYGDDAASDQQYGEGGSH-GKERPPEREWSGASDRRREREKDL 502

Query: 113 PVVPGLPXRRHGEER 69
           P  P  P RRH +ER
Sbjct: 503 PPPPDWPERRHRDER 517


>12_01_0556 -
           4514686-4514868,4515168-4515290,4515381-4515617,
           4515747-4516358
          Length = 384

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 608 LKIYSWQLSLEFVFKICFLFCLIWFGN 688
           +K+ SW L ++FV  I  +   +WFGN
Sbjct: 217 MKLASWSLPVKFVDFILVVLAYLWFGN 243


>01_04_0124 + 16359695-16359734,16360217-16360453,16361133-16362104,
            16362211-16362398,16362564-16363942,16364024-16365047,
            16365171-16365566,16367484-16367999,16368085-16368226,
            16369409-16369553,16371351-16371432,16371851-16371895,
            16372018-16372140
          Length = 1762

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 563  FIYLLSVIFFLDLVRLKIYSWQLSLEFVFKICFLFCLIWF 682
            F+++L ++FFL +V   IY W  +   V  I +LF L+ F
Sbjct: 1275 FVFILMILFFLIVVDRIIYLWSFATGKV--IFYLFNLVLF 1312


>01_04_0086 + 15916555-15916905,15917236-15917262
          Length = 125

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 93  GKARDDWKIIRTLSEVVGERLPYDNQTRSTARMSEITP 206
           G A  DW     +   VGE+  YD  + S A+   ITP
Sbjct: 84  GSAGGDWTAASAVQSWVGEKSDYDYASNSCAQGKVITP 121


>07_01_0719 + 5495271-5495726,5495894-5496949
          Length = 503

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 185 RGGPRLVVVREPLAHHFRQRPNDLPVVPGLP 93
           R   RL  +   L+ H R  P DLP V GLP
Sbjct: 48  RNAARLGAIPPALSAHLRVVPLDLPAVDGLP 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,218,828
Number of Sequences: 37544
Number of extensions: 370896
Number of successful extensions: 881
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)