Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0319.Seq
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21)          46   5e-05
SB_35388| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21)
          Length = 858

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +3

Query: 135 EVVGERLPYDNQTRSTARMSEITPXLVAYGDVQDNNYFA 251
           E+ G+ LPY+ Q     RM+EI P L  YGDV+  N+F+
Sbjct: 170 EIAGQTLPYETQEEIRRRMTEIAPNLTRYGDVEQANFFS 208


>SB_35388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 69  TLLAVSPXGKARDDWKIIRTLSEVVGERLPYDNQTRSTARM-SEITPXLVAYG 224
           T+L ++P  K+  D   IRTL+ ++ +R PY       +R   + TP L+  G
Sbjct: 16  TVLTLTPLKKSLVDLTWIRTLARLLEKRSPYHGAIAPLSRYEGKTTPYLLRLG 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,472,668
Number of Sequences: 59808
Number of extensions: 426075
Number of successful extensions: 971
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)