Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0319.Seq
(806 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006768-4|AAF60575.1| 729|Caenorhabditis elegans Hypothetical ... 77 2e-14
Z83228-3|CAB60998.1| 536|Caenorhabditis elegans Hypothetical pr... 31 0.97
AF145377-1|AAD39816.1| 536|Caenorhabditis elegans MOM-4 protein. 31 0.97
AF143242-1|AAD37359.1| 536|Caenorhabditis elegans protein kinas... 31 0.97
AC024849-4|AAL27260.2| 152|Caenorhabditis elegans Hypothetical ... 30 2.2
AC006768-6|AAO25976.1| 305|Caenorhabditis elegans Hypothetical ... 29 5.2
AC006768-5|AAO25977.1| 634|Caenorhabditis elegans Hypothetical ... 29 5.2
Z81522-6|CAB04230.1| 277|Caenorhabditis elegans Hypothetical pr... 28 6.8
AL032658-2|CAA21744.1| 687|Caenorhabditis elegans Hypothetical ... 28 9.0
>AC006768-4|AAF60575.1| 729|Caenorhabditis elegans Hypothetical
protein Y45G12B.1a protein.
Length = 729
Score = 76.6 bits (180), Expect = 2e-14
Identities = 39/76 (51%), Positives = 50/76 (65%)
Frame = +3
Query: 36 TYVNAEGRAQQTLLAVSPXGKARDDWKIIRTLSEVVGERLPYDNQTRSTARMSEITPXLV 215
TYVN EGR+Q+ AVSP G AR DWKIIR +SEV G+ LPY + R++EI P LV
Sbjct: 595 TYVNTEGRSQRAYPAVSPPGDARVDWKIIRAVSEVSGKSLPYSDLKEIRQRLNEIAPHLV 654
Query: 216 AYGDVQDNNYFAKRRL 263
Y D++ + F K+ L
Sbjct: 655 RYRDLEASP-FVKQAL 669
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 5/54 (9%)
Frame = +2
Query: 269 QSLQKSL-SGKLDVK----LKQLEDYFMTDPISRASPTMAKCIQAVIKQKQSPY 415
Q+LQ + +G +DV L++L DY+ T+ ISR S +MA+ +A I+ K +PY
Sbjct: 667 QALQLAQPTGSIDVDVSPVLRELSDYYQTNVISRYSRSMAQARKAAIENKTNPY 720
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 3 NIIDLCPVGALT 38
NIID+CPVGALT
Sbjct: 224 NIIDICPVGALT 235
>Z83228-3|CAB60998.1| 536|Caenorhabditis elegans Hypothetical
protein F52F12.3 protein.
Length = 536
Score = 31.1 bits (67), Expect = 0.97
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +3
Query: 114 KIIRTLSEVVGERLPYDNQTRSTARMSEITPXLVAYGDVQDNNYFAKRRL 263
+++R E++ + +D+ R + + Y D+QD+NYF+ R+
Sbjct: 487 EVMRAKHELIAQWPQHDHTVELLERKYYLEQEIARYRDIQDDNYFSTERM 536
>AF145377-1|AAD39816.1| 536|Caenorhabditis elegans MOM-4 protein.
Length = 536
Score = 31.1 bits (67), Expect = 0.97
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +3
Query: 114 KIIRTLSEVVGERLPYDNQTRSTARMSEITPXLVAYGDVQDNNYFAKRRL 263
+++R E++ + +D+ R + + Y D+QD+NYF+ R+
Sbjct: 487 EVMRAKHELIAQWPQHDHTVELLERKYYLEQEIARYRDIQDDNYFSTERM 536
>AF143242-1|AAD37359.1| 536|Caenorhabditis elegans protein kinase
MOM-4 protein.
Length = 536
Score = 31.1 bits (67), Expect = 0.97
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +3
Query: 114 KIIRTLSEVVGERLPYDNQTRSTARMSEITPXLVAYGDVQDNNYFAKRRL 263
+++R E++ + +D+ R + + Y D+QD+NYF+ R+
Sbjct: 487 EVMRAKHELIAQWPQHDHTVELLERKYYLEQEIARYRDIQDDNYFSTERM 536
>AC024849-4|AAL27260.2| 152|Caenorhabditis elegans Hypothetical
protein Y67D8B.5 protein.
Length = 152
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 653 ICFLFCLIWFGNFQ*TSNSDKSCIHLRII 739
ICF+ CLIWF +K C HL +I
Sbjct: 8 ICFVSCLIWFIVSLMYIKKEKECTHLTMI 36
>AC006768-6|AAO25976.1| 305|Caenorhabditis elegans Hypothetical
protein Y45G12B.1b protein.
Length = 305
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 3 NIIDLCPVGALT 38
NIID+CPVGALT
Sbjct: 224 NIIDICPVGALT 235
>AC006768-5|AAO25977.1| 634|Caenorhabditis elegans Hypothetical
protein Y45G12B.1c protein.
Length = 634
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 3 NIIDLCPVGALT 38
NIID+CPVGALT
Sbjct: 224 NIIDICPVGALT 235
>Z81522-6|CAB04230.1| 277|Caenorhabditis elegans Hypothetical
protein F32B4.5 protein.
Length = 277
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 57 RAQQTLLAVSPXGKARDDWKIIRTLSEVV 143
RA Q+LLA SP + D KI+R L E +
Sbjct: 81 RAPQSLLATSPDATSDSDDKIVRILVEAL 109
>AL032658-2|CAA21744.1| 687|Caenorhabditis elegans Hypothetical
protein Y76A2B.3 protein.
Length = 687
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 210 LVAYGDVQDNNYFAKRRLWHRAFRNPCL 293
LV GDV D NYFAK + PC+
Sbjct: 475 LVKLGDVPDLNYFAKDGKGEIRIKGPCV 502
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,988,263
Number of Sequences: 27780
Number of extensions: 347206
Number of successful extensions: 716
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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