Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0319.Seq
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   4.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.7  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 497 NFVTSVLRAAINDYVKISPSTAFIYLLSVIFFLDLV 604
           NF T +++    + V + P     + L   FFLDL+
Sbjct: 139 NFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLI 174


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 497 NFVTSVLRAAINDYVKISPSTAFIYLLSVIFFLDLV 604
           NF T +++    + V + P     + L   FFLDL+
Sbjct: 139 NFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLI 174


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 497 NFVTSVLRAAINDYVKISPSTAFIYLLSVIFFLDLV 604
           NF T +++    + V + P     + L   FFLDL+
Sbjct: 139 NFRTGIMQQDNAEQVILDPKLIAKHYLRTWFFLDLI 174


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 515 LRAAINDYVKISPSTAFIYLLSVI 586
           LRA +++  + +P T F  LLSV+
Sbjct: 508 LRAYVDNRRRPNPGTVFARLLSVL 531


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 696 HWKFPNHIK 670
           HWKFPN ++
Sbjct: 864 HWKFPNLVE 872


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,551
Number of Sequences: 438
Number of extensions: 4127
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)