Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0319.Seq
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37510.2 68418.m04518 NADH-ubiquinone dehydrogenase, mitochon...    65   5e-11
At5g37510.1 68418.m04517 NADH-ubiquinone dehydrogenase, mitochon...    65   5e-11
At2g31910.1 68415.m03898 cation/hydrogen exchanger, putative sim...    28   8.4  
At1g47210.2 68414.m05226 cyclin family protein similar to A-type...    28   8.4  

>At5g37510.2 68418.m04518 NADH-ubiquinone dehydrogenase,
           mitochondrial, putative similar to NADH-ubiquinone
           oxidoreductase 75 kDa subunit, mitochondrial from
           Solanum tuberosum [SP|Q43644]
          Length = 748

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 31/60 (51%), Positives = 39/60 (65%)
 Frame = +3

Query: 36  TYVNAEGRAQQTLLAVSPXGKARDDWKIIRTLSEVVGERLPYDNQTRSTARMSEITPXLV 215
           TY N EG  QQT+ AV   G ARDDWKI+R LSEV G +LPY++     +R+  + P LV
Sbjct: 629 TYENTEGFTQQTVPAVPTVGDARDDWKIVRALSEVSGVKLPYNSIEGVRSRIKSVAPNLV 688



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = +2

Query: 320 LEDYFMTDPISRASPTMAKCIQAVIKQ 400
           +E+++MT+ I+RAS  MA+C   ++K+
Sbjct: 719 VENFYMTNSITRASKIMAQCSAVLLKK 745



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +3

Query: 3   NIIDLCPVGALT 38
           N+ID+CPVGALT
Sbjct: 263 NVIDICPVGALT 274


>At5g37510.1 68418.m04517 NADH-ubiquinone dehydrogenase,
           mitochondrial, putative similar to NADH-ubiquinone
           oxidoreductase 75 kDa subunit, mitochondrial from
           Solanum tuberosum [SP|Q43644]
          Length = 745

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 31/60 (51%), Positives = 39/60 (65%)
 Frame = +3

Query: 36  TYVNAEGRAQQTLLAVSPXGKARDDWKIIRTLSEVVGERLPYDNQTRSTARMSEITPXLV 215
           TY N EG  QQT+ AV   G ARDDWKI+R LSEV G +LPY++     +R+  + P LV
Sbjct: 629 TYENTEGFTQQTVPAVPTVGDARDDWKIVRALSEVSGVKLPYNSIEGVRSRIKSVAPNLV 688



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = +2

Query: 320 LEDYFMTDPISRASPTMAKCIQAVIKQ 400
           +E+++MT+ I+RAS  MA+C   ++K+
Sbjct: 719 VENFYMTNSITRASKIMAQCSAVLLKK 745



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +3

Query: 3   NIIDLCPVGALT 38
           N+ID+CPVGALT
Sbjct: 263 NVIDICPVGALT 274


>At2g31910.1 68415.m03898 cation/hydrogen exchanger, putative
           similar to monovalent cation:proton antiporter family 2
           (CPA2) members (see PMID:11500563 for other members)
          Length = 735

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 42  VNAEGRAQQTLLAVSPXGKARDDWKIIRTLSEVVGERLPYDNQTRSTARMSE 197
           VN +G   QT+ AVSP     +D  ++    +     LPY     S  R++E
Sbjct: 440 VNNDGVMVQTITAVSPYATMDEDICLLAEDKQACFILLPYHKNMTSDGRLNE 491


>At1g47210.2 68414.m05226 cyclin family protein similar to A-type
           cyclin [Catharanthus roseus] GI:2190259; contains Pfam
           profile PF00134: Cyclin, N-terminal domain
          Length = 372

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -1

Query: 200 DLAHARGGPRLVVVREPLAHHFRQRPNDLPVVPGLP 93
           DL  +R G  L  VRE   HH  Q    +PV P LP
Sbjct: 328 DLYLSRRGGALQAVREKYKHHKFQCVATMPVSPELP 363


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,761,492
Number of Sequences: 28952
Number of extensions: 309632
Number of successful extensions: 683
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)