Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0315.Seq
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    56   6e-09
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    28   1.9  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   4.4  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.4  
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac...    27   4.4  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    27   4.4  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    26   7.6  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   7.6  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    26   7.6  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    26   7.6  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.6  

>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 56.0 bits (129), Expect = 6e-09
 Identities = 29/78 (37%), Positives = 42/78 (53%)
 Frame = +1

Query: 529 PTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITRR 708
           P KGG+RF   V    +K L     FK A   +P GG K G   +PK  S++E+ + ++ 
Sbjct: 75  PYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLPMGGGKGGSDFDPKGKSDNEIRRFSQA 134

Query: 709 FTLELAKKGFIGPGVDVP 762
           F  +L +  +IGP  DVP
Sbjct: 135 FMRQLFR--YIGPQTDVP 150


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 827 RRSSHKYRRSKTFLVRRTHVRRGTSTPGPMNPFLASSRVK 708
           R S    RRS +F  RR H + GT      NPF  SS ++
Sbjct: 102 RASQSLLRRSSSFF-RRRHRKNGTHASTDNNPFSESSTLQ 140


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 720 TCQKRIHWAWRG 755
           TC +R+ WAWRG
Sbjct: 662 TCDRRMVWAWRG 673


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 431 CDHILEIQFPLRR 469
           CDHI+ +Q+PL+R
Sbjct: 120 CDHIVNLQYPLKR 132


>SPAC6F12.04 |||COPI-coated vesicle associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -2

Query: 432 HGSISFRIPATFFFFSSMGVLDFKSS--TSFLRQLDRLGGKNILPCGRTSDSHL*EY 268
           +GS  F      FF++ MG L F  S  TSFL  L  L G  I  CG    + L +Y
Sbjct: 61  YGSFMFSFLGRGFFYAFMGTLLFSYSGFTSFLGFLVLLAG--IAYCGANYVAGLQDY 115


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 20/44 (45%), Positives = 22/44 (50%)
 Frame = +1

Query: 526 TPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIK 657
           TPT  G   ST +T   V+ALS L     ACV  P  G   GIK
Sbjct: 372 TPTPFGEGKST-LTAGLVQALSNLDKLAIACVRQPSQGPTFGIK 414


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +1

Query: 541 GIRFSTDVTRDEVKALSALMTFKCAC-----VDVPFGGAKAGIKINPKEY-SEHELEKIT 702
           GIR  T +TR  ++A  +L+   C C     VD+ F  A+ GI +    Y +   + ++ 
Sbjct: 102 GIRSKTRLTRRVLEAADSLIVIGCFCIGTNQVDLDF-AAERGIAVFNSPYANSRSVAELV 160

Query: 703 RRFTLELAKK 732
             + + LA++
Sbjct: 161 IGYIISLARQ 170


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +1

Query: 535  KGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGI 654
            KGG  F    + D   A S   T  C    +PFG    GI
Sbjct: 1179 KGGFNFDFSSSTDTYAATSYAYTATCTQSFLPFGLGNGGI 1218


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 688 LEKITRRFTLELAKKGFIGPGVDVPLL-TWV 777
           L ++T RF  EL K     PG DVP++ TW+
Sbjct: 45  LHRVTDRFVSELYKGLTTNPG-DVPMVPTWI 74


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 485 RNRQNRASEEIESQECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQAFFDN 336
           R RQ++   EIE++EC      ++E  L+     +  SL+     AFFD+
Sbjct: 710 RERQSQLLYEIEAEECQNKQKELIEKSLMQ----KGRSLSPKKSNAFFDS 755


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 524 LCVECLRDSLISFRNRQNRASEEIESQ 444
           +C  CL+  L  F ++++  S +IES+
Sbjct: 17  ICESCLKKQLYDFYHKRDEFSRDIESE 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,725,446
Number of Sequences: 5004
Number of extensions: 82117
Number of successful extensions: 275
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)