Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0315.Seq
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595...    81   1e-15
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093...    79   6e-15
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259...    78   1e-14
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168...    47   2e-05
11_06_0074 - 19821699-19823702                                         29   6.1  
02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839...    28   8.0  
01_01_0104 + 780442-781273,782514-783424                               28   8.0  

>02_05_0144 +
           26258841-26258948,26259099-26259212,26259335-26259556,
           26259660-26259734,26259827-26259943,26260046-26260296,
           26260833-26260908,26261045-26261131,26261216-26261401
          Length = 411

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 42/85 (49%), Positives = 52/85 (61%)
 Frame = +1

Query: 508 KHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHE 687
           +H   R P KGGIR+  +V  DEV AL+ LMT+K A   VP+GGAK GI   P E S  E
Sbjct: 57  QHDNSRGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAVPYGGAKGGIGCTPGELSRSE 116

Query: 688 LEKITRRFTLELAKKGFIGPGVDVP 762
           LE++TR FT ++     IG   DVP
Sbjct: 117 LERLTRVFTQKI--HDLIGINTDVP 139


>04_04_0678 +
           27207340-27207447,27207555-27207668,27209111-27209332,
           27209407-27209481,27209569-27209685,27210145-27210395,
           27210686-27210761,27210862-27210948,27211037-27211222
          Length = 411

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 41/85 (48%), Positives = 52/85 (61%)
 Frame = +1

Query: 508 KHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHE 687
           +H   R P KGGIR+  +V  DEV AL+ LMT+K A   +P+GGAK GI   P E S  E
Sbjct: 57  QHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCAPGELSTSE 116

Query: 688 LEKITRRFTLELAKKGFIGPGVDVP 762
           LE++TR FT ++     IG   DVP
Sbjct: 117 LERLTRVFTQKI--HDLIGAHTDVP 139


>03_06_0282 -
           32824950-32825135,32825247-32825505,32825651-32825901,
           32826309-32826425,32826613-32826687,32826788-32827009,
           32827396-32827509,32827694-32827801
          Length = 443

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 40/85 (47%), Positives = 54/85 (63%)
 Frame = +1

Query: 508 KHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHE 687
           +H   R P KGGIR+  +V  DEV AL+ LMT+K A  ++P+GGAK GI  +P + S  E
Sbjct: 57  QHDNARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPGDLSISE 116

Query: 688 LEKITRRFTLELAKKGFIGPGVDVP 762
           LE++TR FT ++     IG   DVP
Sbjct: 117 LERLTRVFTQKI--HDLIGIHTDVP 139


>01_05_0337 +
           21115388-21115961,21116471-21116597,21116683-21116884,
           21117460-21117546,21117622-21117681,21117800-21117886,
           21118451-21118522,21118675-21118730,21118812-21118897,
           21119427-21119517,21119593-21119750,21119827-21119918,
           21120110-21120190,21120282-21120479
          Length = 656

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 27/78 (34%), Positives = 38/78 (48%)
 Frame = +1

Query: 529 PTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITRR 708
           P +GG+RF   +T    K L+   T K A      GGA  G   +PK  SE E+ +  + 
Sbjct: 278 PCRGGLRFHPSMTLSVAKFLAFEQTLKNALSQYKLGGAAGGSDFDPKGKSESEIMRFCQS 337

Query: 709 FTLELAKKGFIGPGVDVP 762
           F  EL +  ++GP  D P
Sbjct: 338 FMDELYR--YLGPDQDFP 353


>11_06_0074 - 19821699-19823702
          Length = 667

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 661 NPKEYSEHELEKITRRFTLELAKKGF 738
           N + ++EH++EKIT  ++  + K GF
Sbjct: 27  NIRSFTEHDIEKITSNYSTLIGKGGF 52


>02_04_0515 +
           23582105-23583519,23583613-23583741,23583835-23583970,
           23584051-23584139,23584236-23584347,23584427-23584533,
           23584630-23584723
          Length = 693

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 296 LPHGRIFFP--PSLSSCRRKLVEDLKSRTPIEEKKKKVAG 409
           LP  + F P  P+L+   R+  + +KS  P+EE++ K  G
Sbjct: 645 LPRSKDFMPTFPALNEQDRRFKKHMKSPDPLEEQRMKEQG 684


>01_01_0104 + 780442-781273,782514-783424
          Length = 580

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 664 PKEYSEHELEKITRRFTLELAKKGF 738
           P  YS  +++KITRRF  +L + GF
Sbjct: 324 PTRYSFSDVKKITRRFKEQLGQGGF 348


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,257,319
Number of Sequences: 37544
Number of extensions: 536412
Number of successful extensions: 1444
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)