Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0315.Seq
         (838 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)            136   3e-32
SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)               54   2e-07
SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)               54   2e-07
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   6e-07
SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)               30   2.0  
SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_20251| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_35088| Best HMM Match : Rota_NS26 (HMM E-Value=9.9)                 29   4.7  
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)         29   4.7  
SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)                 28   8.2  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  28   8.2  
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_33311| Best HMM Match : RIO1 (HMM E-Value=0)                        28   8.2  

>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
          Length = 520

 Score =  136 bits (328), Expect = 3e-32
 Identities = 63/85 (74%), Positives = 73/85 (85%)
 Frame = +1

Query: 508 KHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHE 687
           +HS HR+P KGGIR+S DV  DEV+AL+ LMTFKCA VDVPFGGAK GIKI+P ++S  E
Sbjct: 122 QHSHHRSPCKGGIRYSEDVDIDEVQALATLMTFKCAVVDVPFGGAKGGIKIDPSQHSVTE 181

Query: 688 LEKITRRFTLELAKKGFIGPGVDVP 762
           LEKITRRFT+ELAKK FIGPG+DVP
Sbjct: 182 LEKITRRFTVELAKKHFIGPGLDVP 206



 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 7/157 (4%)
 Frame = +2

Query: 383 EEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMILGYRANIPH------TGLQPKEV 544
           E+KK ++ GIL +M+PC  +L + FP++ D+G+Y+++ GYRA   H       G++  E 
Sbjct: 80  EDKKHRIKGILDVMKPCQDVLSVVFPIKLDNGEYKLVQGYRAQHSHHRSPCKGGIRYSED 139

Query: 545 FDSQRT*PEMKLRRYQL**PSSARAWTCLSAVLRPVSRSIPKNTPSMNWKRSLVVSPLNL 724
            D         L  ++                + P   S+   T      R   V    L
Sbjct: 140 VDIDEVQALATLMTFKCAVVDVPFGGAKGGIKIDPSQHSV---TELEKITRRFTV---EL 193

Query: 725 PKKDSLGLAWMSPS*H-GYGEREMSWIADTYAKTVGF 832
            KK  +G     P+   G GEREMSW+AD+Y  T+GF
Sbjct: 194 AKKHFIGPGLDVPAPDMGTGEREMSWMADSYDMTLGF 230


>SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
          Length = 448

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
 Frame = +1

Query: 487 NDIRLSR----KHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGI 654
           N+IR++R    + ++   P KGG+RF   V    +K L      K +   +P GG K G 
Sbjct: 71  NNIRVNRGFRVEFNSTIGPYKGGLRFHPTVNLGILKFLGFEQVLKNSLTTLPLGGGKGGS 130

Query: 655 KINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVP 762
             +PK  S+HE+    + F  EL +   IGP  DVP
Sbjct: 131 DFDPKGKSDHEVMSFCQSFMTELQR--HIGPNTDVP 164


>SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
          Length = 486

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
 Frame = +1

Query: 487 NDIRLSR----KHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGI 654
           N+IR++R    + ++   P KGG+RF   V    +K L      K +   +P GG K G 
Sbjct: 109 NNIRVNRGFRVEFNSTIGPYKGGLRFHPTVNLGILKFLGFEQVLKNSLTTLPLGGGKGGS 168

Query: 655 KINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVP 762
             +PK  S+HE+    + F  EL +   IGP  DVP
Sbjct: 169 DFDPKGKSDHEVMSFCQSFMTELQR--HIGPNTDVP 202


>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 997

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 27/78 (34%), Positives = 40/78 (51%)
 Frame = +1

Query: 529 PTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITRR 708
           P KGG+RF   V    +K L      K +   +P GG K G   +PK  +++E+ +  + 
Sbjct: 416 PYKGGLRFHPSVNLGILKFLGFEQVLKNSLTTLPMGGGKGGSNFDPKGKTDNEVMRFCQS 475

Query: 709 FTLELAKKGFIGPGVDVP 762
           F LEL +   IGP  D+P
Sbjct: 476 FMLELQR--HIGPDTDIP 491


>SB_39930| Best HMM Match : Keratin_B2 (HMM E-Value=0.25)
          Length = 312

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 163 SVQNEALNTMFRIIPA-GVNVCCRTYASHEIPISSKIFLQVRIR 291
           +V  +A+NT  R +P   +N CC+T  +  I I   + L + IR
Sbjct: 262 TVLTKAINTCCRTVPTKAINTCCKTVPTKAINICETVQLWLFIR 305


>SB_24841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +2

Query: 263 QRYSYKCESEVLPHGRIFFPPSLSSC 340
           QR  YK  SE   HGR  FP SL  C
Sbjct: 163 QRVGYKVSSEAHIHGRQSFPLSLDHC 188


>SB_20251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -3

Query: 470 RASEEIESQECDRMVP*VLEYRLLSFSSLQWVSLTSN-LQQAFFDNLTGSVEKIFYHVEE 294
           RA+   +  +C   +P  ++ R LSF+   WV L+ + + +    +  GS ++  +HV E
Sbjct: 17  RATHFDKDADCYAQIPHKIDPRGLSFTIAAWVKLSKDAVTRKSIISDWGSKKQFSFHVYE 76

Query: 293 LRIRTCR 273
            ++R  R
Sbjct: 77  TKLRIQR 83


>SB_35088| Best HMM Match : Rota_NS26 (HMM E-Value=9.9)
          Length = 170

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 317 FPPSLSSCRRKLVEDLK--SRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEM 490
           F  SLSS R K+  DLK  S + +++   K A +  L++ C ++L   F +      +E 
Sbjct: 50  FSSSLSSKRFKMYHDLKDNSTSSLKQTTVKEACVRSLVDCCCNVLSANFSISYVQDQWET 109

Query: 491 I 493
           +
Sbjct: 110 V 110


>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
          Length = 1052

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 317 FPPSLSSCRRKLVEDLK--SRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEM 490
           F  SLSS R K+  DLK  S + +++   K A +  L++ C ++L   F +      +E 
Sbjct: 282 FSSSLSSKRFKMYHDLKDNSTSSLKQTTVKEACVRSLVDCCCNVLSANFSISYVQDQWET 341

Query: 491 I 493
           +
Sbjct: 342 V 342


>SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)
          Length = 1127

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 737 SLGLAWMSPS*HGYGEREMSWIADTYAKTVGFS 835
           S  L W      GYGE E  W+ D  A+ V F+
Sbjct: 260 SFALDWYHVVTIGYGEGEACWLGDVDAQLVAFA 292


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -3

Query: 833 KNRRSSHKYRRSKTFLVRRTHVR----RGTSTPGPMNPFLASSRVKRRVIFSSSC 681
           ++ RSS +YR S++    R+H R    R   +  P     + SR  RR   SSSC
Sbjct: 261 RSPRSSKRYRSSRSHRKHRSHSRSRSPRSKRSRSPRKRRRSKSRSPRRYRDSSSC 315


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 317 FPPSLSSCRRKLVEDLK--SRTPIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEM 490
           F  SLSS R K+  DLK  S + +++   K A +  L++ C ++L   F +      +E 
Sbjct: 148 FLSSLSSKRFKMYHDLKDNSTSSLKQTTVKEACVRSLVDCCCNVLSANFSISYVQDQWET 207

Query: 491 I 493
           +
Sbjct: 208 V 208


>SB_33311| Best HMM Match : RIO1 (HMM E-Value=0)
          Length = 490

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = -3

Query: 446 QECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQAFFDNLTGSVEKIFYHVEELRIRTCRNI 267
           ++C +M+  + +   L  + L   ++  +  + +F +++ SVE I  H  E   R CRN+
Sbjct: 361 EQCIQMMCTMYQKARLVHADLSAYNMLWHEGRVWFIDVSQSVEPIHPHALEFLYRDCRNV 420

Query: 266 FE 261
            E
Sbjct: 421 VE 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,617,868
Number of Sequences: 59808
Number of extensions: 616282
Number of successful extensions: 1566
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)