Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0315.Seq
         (838 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   2.2  
AF457549-1|AAL68779.1|  257|Anopheles gambiae antigen 5-related ...    25   3.8  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   6.6  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   8.7  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -2

Query: 285  SHL*EYL*AYRNLMTSVCAAADIHSSWYDSEH-CIEGFILNRIL 157
            SHL EY   Y N +T V   + + S      H   EGF  +R +
Sbjct: 1746 SHLKEYFAFYENFITQVHGTSHVMSGMVAKAHPSCEGFPYSRTI 1789


>AF457549-1|AAL68779.1|  257|Anopheles gambiae antigen 5-related 2
           protein protein.
          Length = 257

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = +1

Query: 610 CACVDVPFGGAKAGIK-----INPKEYSEHELEKITRRFTLELAK-KGFIGPGVDVPLLT 771
           C    +P G A AG+K     IN    +    E  TRR  L L + K F+ P V +P LT
Sbjct: 38  CNPPGIPGGPACAGLKPMVITINSTLQTLILSEHNTRRSQLALGQLKPFL-PAVRMPTLT 96

Query: 772 W 774
           W
Sbjct: 97  W 97


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 781 RTRNVLDRRYLCEDRR 828
           RTRN   ++YLCE +R
Sbjct: 305 RTRNQQIQKYLCEQKR 320


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 344 FDNLTGSVEKIFYHVEELRIR 282
           F  L  ++E +  H+EELR+R
Sbjct: 805 FTELPDTIELVDAHLEELRVR 825


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 917,648
Number of Sequences: 2352
Number of extensions: 20302
Number of successful extensions: 264
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88478514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)