Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0315.Seq
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical pr...   147   7e-36
Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z50006-6|CAA90298.1|  334|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    28   7.2  
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AY572975-1|AAT77228.1|  580|Caenorhabditis elegans KQT-3 potassi...    28   9.5  
AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical ...    28   9.5  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   9.5  

>Z73899-2|CAA98074.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK829.4 protein.
          Length = 536

 Score =  147 bits (357), Expect = 7e-36
 Identities = 64/85 (75%), Positives = 76/85 (89%)
 Frame = +1

Query: 508 KHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHE 687
           +HS HRTPTKGGIR+S DV  DEVKALSALMT+KCA VDVPFGGAK G+KI+PK+Y+++E
Sbjct: 116 QHSEHRTPTKGGIRYSLDVCEDEVKALSALMTYKCAVVDVPFGGAKGGVKIDPKQYTDYE 175

Query: 688 LEKITRRFTLELAKKGFIGPGVDVP 762
           +EKITRR  +E AKKGF+GPGVDVP
Sbjct: 176 IEKITRRIAIEFAKKGFLGPGVDVP 200



 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
 Frame = +2

Query: 347 KLVEDLKSRTPIEEKKKK-VAGILKLMEPCDHILEIQFPLRRDSGDYEMILGYRANIPHT 523
           KL E+LKS +  ++ KK  V+GIL  ++P + +L I FP+RRD+G++E+I  +RA     
Sbjct: 61  KLAEELKSNSLSQKDKKNLVSGILGAIKPVNKVLYITFPIRRDNGEFEVIEAWRAQHSEH 120

Query: 524 GLQPKEVFDSQRT*PEMKLRRYQL**PSSARAWTCLSAVLRPVSRSIPKNTPSMNWKRSL 703
               K          E +++                    +   +  PK       ++  
Sbjct: 121 RTPTKGGIRYSLDVCEDEVKALSALMTYKCAVVDVPFGGAKGGVKIDPKQYTDYEIEKIT 180

Query: 704 VVSPLNLPKKDSLGLAWMSPS*H-GYGEREMSWIADTYAKTVG 829
               +   KK  LG     P+   G GEREM WIADTYA+T+G
Sbjct: 181 RRIAIEFAKKGFLGPGVDVPAPDMGTGEREMGWIADTYAQTIG 223



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 255 DKLKDIPTSANPKFFHMVEYFFHRACQVVEESL 353
           D+ K +    NP F+ MV+++F++  +V+   L
Sbjct: 30  DEQKPMEEQVNPSFYKMVDFYFNKGAEVIAPKL 62


>Z78016-5|CAB01442.2|  479|Caenorhabditis elegans Hypothetical
           protein R186.5 protein.
          Length = 479

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 112 WWLIMLSTTIGLGIGSPYTY 53
           WW I+  TTIG G  +P+TY
Sbjct: 368 WWAIVTMTTIGYGDITPHTY 387


>Z50006-6|CAA90298.1|  334|Caenorhabditis elegans Hypothetical
           protein T07C5.5 protein.
          Length = 334

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 414 RIPATFFFFSSMGVLDFKSSTSFLRQLD 331
           R P T F F   GV++  S  SF+RQLD
Sbjct: 127 RKPGTVFNFCDWGVINHLSCISFIRQLD 154


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
            (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 436  SHS*DSISSEAR-FWRLRNDIRLSRKHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKC 612
            SH   +++S  R F + + D R  R HS+HR    G I+ S D   +E+  L      + 
Sbjct: 947  SHKFGTLNSAIRGFTKKKTDTRRIRSHSSHR----GSIQLSFD-KMEELDYLKKNAHIRY 1001

Query: 613  ACVDVPFGGAKAGI 654
            A +D P  G  + I
Sbjct: 1002 AVIDYPRIGLNSKI 1015


>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical
           protein W06A7.3f protein.
          Length = 2488

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 377 PIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMIL 496
           PIE  +++   + K  E CDH+++ Q  L R S   E I+
Sbjct: 444 PIENSEQETVAV-KATESCDHVVDSQKTLERASSLEEDIM 482


>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical
           protein W06A7.3c protein.
          Length = 2484

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 377 PIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMIL 496
           PIE  +++   + K  E CDH+++ Q  L R S   E I+
Sbjct: 444 PIENSEQETVAV-KATESCDHVVDSQKTLERASSLEEDIM 482


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical
           protein W06A7.3a protein.
          Length = 2607

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 377 PIEEKKKKVAGILKLMEPCDHILEIQFPLRRDSGDYEMIL 496
           PIE  +++   + K  E CDH+++ Q  L R S   E I+
Sbjct: 444 PIENSEQETVAV-KATESCDHVVDSQKTLERASSLEEDIM 482


>AY572975-1|AAT77228.1|  580|Caenorhabditis elegans KQT-3 potassium
           channel protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 121 DAAWWLIMLSTTIGLGIGSPYTY 53
           DA WW ++  TTIG G   P T+
Sbjct: 214 DALWWGVITMTTIGYGDVVPQTW 236


>AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical
           protein Y54G9A.3 protein.
          Length = 621

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 121 DAAWWLIMLSTTIGLGIGSPYTY 53
           DA WW ++  TTIG G   P T+
Sbjct: 255 DALWWGVITMTTIGYGDVVPQTW 277


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 747  WRGCPPPDMGTANEKCLGSPILMRRP 824
            WRG PPP  G ++  C G P LM  P
Sbjct: 1569 WRGGPPPPRGGSH--CQGPPPLMGGP 1592


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,600,487
Number of Sequences: 27780
Number of extensions: 462444
Number of successful extensions: 1267
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)