Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0315.Seq
         (838 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi...    82   5e-16
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil...    79   3e-15
At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi...    78   8e-15
At1g51720.1 68414.m05828 glutamate dehydrogenase, putative simil...    45   5e-05
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    30   1.7  
At2g45820.1 68415.m05698 DNA-binding protein, putative identical...    29   3.8  
At3g11950.1 68416.m01473 UbiA prenyltransferase family protein c...    29   5.1  

>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
           to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
           thaliana] SWISS-PROT:Q38946
          Length = 411

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 41/85 (48%), Positives = 55/85 (64%)
 Frame = +1

Query: 508 KHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHE 687
           +H   R P KGGIR+  +V  DEV AL+ LMT+K A  D+P+GGAK GI  +P++ S  E
Sbjct: 57  QHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPRDLSLSE 116

Query: 688 LEKITRRFTLELAKKGFIGPGVDVP 762
           LE++TR FT ++     IG   DVP
Sbjct: 117 LERLTRVFTQKI--HDLIGIHTDVP 139


>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 41/85 (48%), Positives = 53/85 (62%)
 Frame = +1

Query: 508 KHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHE 687
           +H   R P KGGIR+  +V  DEV AL+ LMT+K A   +P+GGAK GI  +P E S  E
Sbjct: 57  QHDNARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVAKIPYGGAKGGIGCDPSELSLSE 116

Query: 688 LEKITRRFTLELAKKGFIGPGVDVP 762
           LE++TR FT ++     IG   DVP
Sbjct: 117 LERLTRVFTQKI--HDLIGIHTDVP 139


>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 40/85 (47%), Positives = 53/85 (62%)
 Frame = +1

Query: 508 KHSTHRTPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHE 687
           +H   R P KGGIR+  +V  DEV AL+ LMT+K A   +P+GGAK GI  +P + S  E
Sbjct: 57  QHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAKIPYGGAKGGIGCDPSKLSISE 116

Query: 688 LEKITRRFTLELAKKGFIGPGVDVP 762
           LE++TR FT ++     IG   DVP
Sbjct: 117 LERLTRVFTQKI--HDLIGIHTDVP 139


>At1g51720.1 68414.m05828 glutamate dehydrogenase, putative similar
           to NADP-specific glutatamate dehydrogenase (NADP-GDH)
           SP:P28724 [Giardia lamblia (Giardia intestinalis)]
          Length = 637

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 25/78 (32%), Positives = 38/78 (48%)
 Frame = +1

Query: 529 PTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITRR 708
           P +GGIRF   +     K L    T K A      GGA  G   +PK  S++E+ +  + 
Sbjct: 275 PCRGGIRFHPSMNLSIAKFLGFQQTLKNALSPYKLGGASGGSDFDPKGKSDNEIMRFCQS 334

Query: 709 FTLELAKKGFIGPGVDVP 762
           F  E+ +  ++GP  D+P
Sbjct: 335 FMNEMYR--YMGPDKDLP 350


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1696

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +1

Query: 526 TPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITR 705
           +PT  GIR    VT   +KA  AL++ K   V V     K G  ++ +        + TR
Sbjct: 398 SPTSAGIRSGASVTPRSIKARRALLSDKNEKVSVTERNGKLGTHLSDEISVSEGFRRSTR 457

Query: 706 RFTLELAKK 732
           + T    +K
Sbjct: 458 QTTASKNEK 466


>At2g45820.1 68415.m05698 DNA-binding protein, putative identical to
           DNA-binding protein gi|601843|gb|AAA57124 [Arabidopsis
           thaliana]; contains Pfam domain, PF03766: Remorin,
           N-terminal region; contains Pfam domain, PF03763:
           Remorin, C-terminal region
          Length = 190

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +2

Query: 629 LSAVLRPVSRSIPKNTPSMNWKRSLVVSPLNLPKKDSLGLAWMSPS*HGYGEREMSWIAD 808
           L+ V +P+    PK   S +  R ++++ L   KK S   AW          R    I+D
Sbjct: 47  LAVVEKPIEEHTPKKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISD 106

Query: 809 TYA 817
            +A
Sbjct: 107 VHA 109


>At3g11950.1 68416.m01473 UbiA prenyltransferase family protein
           contains Pfam profile PF01040: UbiA prenyltransferase
           family
          Length = 954

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 544 IRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIKINPKEYSEHELEKITR 705
           +RF T ++   ++ L+  +TFK  CV V +   K  I +   E  +  L++I R
Sbjct: 605 VRF-TSLSTSRMRILAVALTFKSRCVYVNYEIPKDQILVGAAESDDPVLDRIAR 657


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,501,342
Number of Sequences: 28952
Number of extensions: 432901
Number of successful extensions: 1156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)