Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0312.Seq
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 156 3e-39
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 28 1.8
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 26 5.4
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 26 7.1
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe... 26 7.1
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 7.1
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 7.1
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 25 9.4
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 156 bits (379), Expect = 3e-39
Identities = 72/86 (83%), Positives = 82/86 (95%)
Frame = -1
Query: 762 GQLEFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSE 583
GQLEFRA+LFVPRRAP DLFE K++KNNIKLYVRRVFI D+CE+LIPE+L FI+GVVDSE
Sbjct: 308 GQLEFRAILFVPRRAPMDLFEAKRKKNNIKLYVRRVFITDDCEELIPEWLGFIKGVVDSE 367
Query: 582 DLPLNISREMLQQNKILKVIRKNLVK 505
DLPLN+SREMLQQNKI+KVIRKNLV+
Sbjct: 368 DLPLNLSREMLQQNKIMKVIRKNLVR 393
Score = 113 bits (272), Expect = 3e-26
Identities = 47/85 (55%), Positives = 71/85 (83%)
Frame = -3
Query: 508 KKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSL 329
++CL++F E+AEDKEN+K +Y+ FSKNLKLGIHED+ NR L++LLRY++ S D+ SL
Sbjct: 393 RRCLDMFNEIAEDKENFKTFYDAFSKNLKLGIHEDAANRPALAKLLRYNSLNSPDDLISL 452
Query: 328 KEYVSRMKENQKHIYYITGENRDQV 254
++Y+++M E+QK+IY+ITGE++ V
Sbjct: 453 EDYITKMPEHQKNIYFITGESKQAV 477
Score = 56.8 bits (131), Expect = 3e-09
Identities = 29/83 (34%), Positives = 45/83 (54%)
Frame = -2
Query: 251 NSSFVERVKKRGYEVVYMTEPIDEYVVQQMREYDGKTLVSVTXXXXXXXXXXXXXXXXXX 72
NS F+E + + ++V++M +PIDEY V Q++E++GK LV++T
Sbjct: 479 NSPFLEIFRAKKFDVLFMVDPIDEYAVTQLKEFEGKKLVNITKDGLELEETDEEKAAREK 538
Query: 71 XXXXXEGLCKVMKNILDNKVEKV 3
E K +K IL +KVEKV
Sbjct: 539 LEKEYEEFAKQLKTILGDKVEKV 561
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/83 (22%), Positives = 36/83 (43%)
Frame = -1
Query: 750 FRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPL 571
F + + +A L ++K N K FI++ + P + F R VVD D
Sbjct: 252 FSVSISLRNKAIQHLLKSKIAANTDKAINCIEFILEAPPSMQPRLIQFTRWVVDKADPNF 311
Query: 570 NISREMLQQNKILKVIRKNLVKN 502
+ + KIL ++ N++++
Sbjct: 312 LKPKAAMILEKILSILSSNIIQS 334
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 656 FSSWTTVRISSQSTLTSLEVLSTVRTFL 573
F+++ +++ S QS L E LSTV TFL
Sbjct: 181 FTAYNSIKQSLQSRLPPDEKLSTVTTFL 208
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -2
Query: 317 IQDEGEPETYL-----LHHWRKQRPGANSSFV 237
++D G PE + L WRKQR G +SS V
Sbjct: 229 LKDIGNPEIRMMLDSGLRDWRKQRSGRSSSHV 260
>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 124
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -1
Query: 594 VDSEDLPLNISREMLQQNKILKVIRKNLVKNA*N 493
++SED+PL+ R+ML++ + RK L+K N
Sbjct: 87 INSEDMPLSDDRDMLKERHVKS--RKLLLKEKGN 118
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Frame = -1
Query: 708 LFENKKRKNNIK-----LYVRRVFIMDNCEDLIPEYLNFIR 601
L EN KNN+ L ++ I++ CE +I + LNF++
Sbjct: 1144 LQENTSSKNNLLQKEWILITKKKVILEQCEYVILDILNFLK 1184
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.8 bits (54), Expect = 7.1
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = -3
Query: 472 DKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSLKEYVSRMKENQK 293
DK Y + +++ K+G D N + S S EAC+ +VS+ K++ K
Sbjct: 818 DKATYVELCQKYG--CKVGFCGDGANDCIALKQADVGVSLSDSEACAAASFVSK-KKSIK 874
Query: 292 HIYYITGENRDQVRTPH 242
++ + E R + H
Sbjct: 875 DVFNVLLEGRCSLILSH 891
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 514 FSKKCLELFEELAEDKENYKKYYEQFSKNL 425
+S+ ++L+E + E K NY Y+ S +L
Sbjct: 398 YSENPMKLYENILEGKVNYPSYFSPASIDL 427
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,382
Number of Sequences: 5004
Number of extensions: 54927
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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