Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0312.Seq
(792 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0) 169 2e-42
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0) 120 2e-27
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10) 59 4e-09
SB_16367| Best HMM Match : TPR_1 (HMM E-Value=0) 32 0.46
SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.61
SB_45596| Best HMM Match : rve (HMM E-Value=1.8e-07) 31 1.1
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3) 31 1.1
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 29 5.7
SB_24439| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0) 28 7.5
SB_17378| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_24812| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_36047| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_21381| Best HMM Match : TPR_1 (HMM E-Value=0) 28 10.0
SB_20575| Best HMM Match : TPR_1 (HMM E-Value=0) 28 10.0
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 28 10.0
SB_11617| Best HMM Match : TPR_1 (HMM E-Value=0) 28 10.0
SB_5975| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 581
Score = 169 bits (411), Expect = 2e-42
Identities = 79/86 (91%), Positives = 85/86 (98%)
Frame = -1
Query: 762 GQLEFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSE 583
GQLEFRALLFVP+RAPFDLFE++K++NNIKLYVRRVFIMDNCEDLIPEYL FI+GVVDSE
Sbjct: 264 GQLEFRALLFVPKRAPFDLFESRKKRNNIKLYVRRVFIMDNCEDLIPEYLGFIKGVVDSE 323
Query: 582 DLPLNISREMLQQNKILKVIRKNLVK 505
DLPLNISREMLQQNKILKVIRKNLVK
Sbjct: 324 DLPLNISREMLQQNKILKVIRKNLVK 349
Score = 148 bits (359), Expect = 4e-36
Identities = 65/85 (76%), Positives = 79/85 (92%)
Frame = -3
Query: 508 KKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSL 329
KKC+ELF E+AED++NYKK+YEQF KNLKLGIHEDS NRAKL++LLRYH+S+SGDE SL
Sbjct: 349 KKCMELFNEIAEDQDNYKKFYEQFGKNLKLGIHEDSVNRAKLADLLRYHSSSSGDELTSL 408
Query: 328 KEYVSRMKENQKHIYYITGENRDQV 254
K+YV+RMKENQK IY+ITGE++DQV
Sbjct: 409 KDYVTRMKENQKDIYFITGESKDQV 433
Score = 93.1 bits (221), Expect = 2e-19
Identities = 50/111 (45%), Positives = 65/111 (58%)
Frame = -2
Query: 335 LSQRVCIQDEGEPETYLLHHWRKQRPGANSSFVERVKKRGYEVVYMTEPIDEYVVQQMRE 156
L V E + + Y + K + ++S+FVERVK RG+EV+YM EPIDEY +QQ++E
Sbjct: 408 LKDYVTRMKENQKDIYFITGESKDQV-SHSAFVERVKSRGFEVLYMVEPIDEYAIQQLKE 466
Query: 155 YDGKTLVSVTXXXXXXXXXXXXXXXXXXXXXXXEGLCKVMKNILDNKVEKV 3
YDGK LVSVT EGLCKV+K+ILD K+EKV
Sbjct: 467 YDGKKLVSVTKEGLELPEDEDEKKAREEKVAKYEGLCKVIKDILDKKIEKV 517
>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 855
Score = 120 bits (288), Expect = 2e-27
Identities = 56/94 (59%), Positives = 79/94 (84%), Gaps = 1/94 (1%)
Frame = -1
Query: 762 GQLEFRALLFVPRRAPFDLFENK-KRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDS 586
G++ FR++LFVP+ AP +LF + K+ + IKL+VRRVFI DN E+++P+YL+FIRGVVDS
Sbjct: 364 GEVTFRSILFVPKAAPSNLFSDYGKKMDAIKLFVRRVFITDNFEEMMPKYLSFIRGVVDS 423
Query: 585 EDLPLNISREMLQQNKILKVIRKNLVKNA*NYLK 484
+DLPLN+SRE LQQ+K+LKVI+K LV+ A + +K
Sbjct: 424 DDLPLNVSREQLQQHKLLKVIKKKLVRKALDMIK 457
Score = 76.2 bits (179), Expect = 3e-14
Identities = 35/88 (39%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
Frame = -3
Query: 508 KKCLELFEELAEDKENYKK-YYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACS 332
+K L++ +++ KE+Y +++++S N+KLG+ ED NR +L++LLR+++S S + S
Sbjct: 450 RKALDMIKKIP--KEDYMATFWKEYSTNIKLGVIEDHSNRTRLAKLLRFYSSNSEKDMTS 507
Query: 331 LKEYVSRMKENQKHIYYITGENRDQVRT 248
L EY+ RMKE Q IY++ G NR +V +
Sbjct: 508 LAEYIERMKEKQDVIYFMAGHNRKEVES 535
Score = 51.6 bits (118), Expect = 7e-07
Identities = 23/54 (42%), Positives = 37/54 (68%)
Frame = -2
Query: 290 YLLHHWRKQRPGANSSFVERVKKRGYEVVYMTEPIDEYVVQQMREYDGKTLVSV 129
++ H RK+ +S FVE++ K GYEV+Y+ EP+DEY +Q + E++GK +V
Sbjct: 524 FMAGHNRKEVE--SSPFVEKLLKEGYEVLYLIEPVDEYCMQSLPEFEGKKFQNV 575
>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
Length = 739
Score = 59.3 bits (137), Expect = 4e-09
Identities = 27/65 (41%), Positives = 40/65 (61%)
Frame = -1
Query: 756 LEFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDL 577
L R++ + P P +F ++ ++ I LY RRV I E ++P+ FIR VVDSED+
Sbjct: 315 LNIRSIFYFPETLP-QMFNMQQMESGISLYSRRVLIQAKAEKMLPQRFRFIRSVVDSEDI 373
Query: 576 PLNIS 562
PLN+S
Sbjct: 374 PLNLS 378
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = -1
Query: 630 LIPEYLNFIRGVVDSEDLPLNISREMLQQNKILKVIRKNLVKNA*NYLKNWQR 472
++P +L FIRGVVDSED+PLN+SRE+LQ + ++K + L +L+ R
Sbjct: 399 VLPRWLRFIRGVVDSEDIPLNLSRELLQDSALIKKLSNVLSARLVKFLQEQAR 451
>SB_16367| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 635
Score = 32.3 bits (70), Expect = 0.46
Identities = 22/81 (27%), Positives = 35/81 (43%)
Frame = -3
Query: 499 LELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSLKEY 320
L LF++ ++ K Y + G +ED+ N + + L T GDE+C K Y
Sbjct: 405 LSLFQKTGDESCQAKAYLSMGKVHFNQGKYEDALNNYQHALSLFRKT---GDESCQAKSY 461
Query: 319 VSRMKENQKHIYYITGENRDQ 257
+ K ++ H Y N Q
Sbjct: 462 LGMGKVHRSHGKYEDAMNNYQ 482
>SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1497
Score = 31.9 bits (69), Expect = 0.61
Identities = 23/60 (38%), Positives = 30/60 (50%)
Frame = -3
Query: 487 EELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSLKEYVSRM 308
+EL DK+N K QF+ NL + S+ A L EL H A GD L+E VS +
Sbjct: 30 KELLPDKKNKSKV-RQFANNLDEVRGKASELTADLEELDPEHIEADGDWLQDLEEAVSEI 88
>SB_45596| Best HMM Match : rve (HMM E-Value=1.8e-07)
Length = 882
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 448 YEQFSKNLKLGIHE-DSQNRAKLSELLRYHTSASGDEACSLKEYVSR 311
Y +F KN ++ + S N KLS L++Y T + L EY SR
Sbjct: 396 YPRFIKNFEVNVKAMSSDNNTKLSYLIQYCTGNAKGGYSELSEYASR 442
>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
Length = 1168
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = -3
Query: 487 EELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSEL--LRYHTSASGDEACSLKEYVS 314
+E+ E++E KK+YE+ + + + K+SE L +H +E SLKE+ +
Sbjct: 29 QEIEEERETLKKFYEEEKNFAREKLEATKRLSEKVSEFESLAHHKE---EEINSLKEFKT 85
Query: 313 RMKENQKHIY 284
+ ++ Q+ ++
Sbjct: 86 KSEKAQQELH 95
>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
Length = 416
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 149 HHTPSSVVLHIHQWAQSCRLLHSHVSSLS 235
HH SS+++H H + S ++H H S S
Sbjct: 42 HHPSSSIIIHHHHPSSSIIIIHHHHPSSS 70
>SB_24439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 153 ILPHLLYYIFINGLSHVDYFIATFLH 230
+L H L+Y+F+ G +H + AT LH
Sbjct: 177 VLIHFLFYVFLVGFAHPENVRATGLH 202
>SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
Length = 296
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 317 IQDEGEPETYLLHHWRKQRPGANSSFVERVKKRGYEVV 204
I + P T ++H WR G S + K+GY+ V
Sbjct: 179 IMTKNMPTTAVIHSWRGTTEGLKESTLIEAAKKGYQSV 216
>SB_17378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 278 HWRKQRPGANSSFVERVKKRGYEVVYMTEPIDEYV 174
+WR PG +++ RVKKRGY+ T +DE V
Sbjct: 358 YWRFLVPG---TYMVRVKKRGYKNTAKTVTVDEGV 389
>SB_24812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1384
Score = 27.9 bits (59), Expect = 10.0
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = -3
Query: 496 ELFEE-LAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSLKEY 320
E FE+ L E K + YEQ +NL+L + +SQ R K+ E ++Y + ++
Sbjct: 449 EEFEKILNEHKRKLDQDYEQEKENLRLNV--ESQ-RKKIEEDIKYERQKLKEGNDRERDE 505
Query: 319 VSRMKENQKHIYYITGENRDQV 254
+SR K+ + Y + ++ V
Sbjct: 506 ISREKKEVDNEKYRVSKVKEAV 527
>SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -3
Query: 421 LGIHEDSQNRAKLSELLRYHTSASGDEACSL-KEYVSRMKENQKHIYYITGENRDQVRTP 245
L E ++ R ++ E LR + S E + K + ++KE+Q E R + TP
Sbjct: 1332 LSDEEMAKLRKQIEEDLRASMANSAKEMEDMNKNWEDKVKESQLESRDKEEEKRKRQATP 1391
Query: 244 HLW 236
HLW
Sbjct: 1392 HLW 1394
>SB_36047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 980
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 687 KNNIKLYVRRVFIMDNCEDLIPEYLNFIR-GVVDSEDLPLNISREMLQ 547
+N ++Y + M+N DL+ + + V D +DLP N S+++ +
Sbjct: 199 ENGPRVYTLNISAMNNHTDLMLQSFGVVTINVTDVDDLPANFSQKLYE 246
>SB_21381| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 316
Score = 27.9 bits (59), Expect = 10.0
Identities = 22/81 (27%), Positives = 34/81 (41%)
Frame = -3
Query: 499 LELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSLKEY 320
L LF++ + K Y + G +ED+ N + + L T GDE+C K Y
Sbjct: 229 LSLFQKTGDVSGQDKAYLGIGKVHRSQGKYEDTLNNYQHTLSLFQKT---GDESCQAKAY 285
Query: 319 VSRMKENQKHIYYITGENRDQ 257
+ K ++ H Y N Q
Sbjct: 286 LGMGKVHRSHGKYEDAMNNYQ 306
>SB_20575| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1106
Score = 27.9 bits (59), Expect = 10.0
Identities = 20/84 (23%), Positives = 35/84 (41%)
Frame = -3
Query: 508 KKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSL 329
++ L LF++ ++ Y + +ED+ N + + L T GDE+C
Sbjct: 299 QQALSLFQKTGDESGQASAYLGMGKVHKSQAKYEDALNNYQHALSLFQKT---GDESCQA 355
Query: 328 KEYVSRMKENQKHIYYITGENRDQ 257
K Y+ K ++ H Y N Q
Sbjct: 356 KAYLGMGKVHRSHGKYEDAMNNYQ 379
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 514 FSKKCLELFEELAE-DKENYKKYYEQFSKNLKLGIHEDS 401
F K E LAE D+E+YK+ QFS +K G+ DS
Sbjct: 232 FGKHVAEYMRSLAEEDEESYKR---QFSAYIKNGVDADS 267
>SB_11617| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 318
Score = 27.9 bits (59), Expect = 10.0
Identities = 22/81 (27%), Positives = 34/81 (41%)
Frame = -3
Query: 499 LELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSLKEY 320
L LF++ + K Y + G +ED+ N + + L T GDE+C K Y
Sbjct: 182 LSLFQKTGDVSGQDKAYLGIGKVHRSQGKYEDTLNNYQHALSLFQKT---GDESCQAKAY 238
Query: 319 VSRMKENQKHIYYITGENRDQ 257
+ K ++ H Y N Q
Sbjct: 239 LGMGKVHRSHGKYEDAMNNYQ 259
>SB_5975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 423 NWVSMKTLKTGLSSLSFCGTTLQHRVMKPALSK 325
+WVS + S+SFC L H++ K + K
Sbjct: 91 HWVSQCPSEPETQSMSFCSEELMHKLRKAGIGK 123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,140,349
Number of Sequences: 59808
Number of extensions: 393318
Number of successful extensions: 1234
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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