Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0312.Seq
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    29   0.050
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                24   1.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 29.1 bits (62), Expect = 0.050
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +1

Query: 535 NFILLKHLT*NV*RKVLTVDNTSNEVKVLWDEILTVVHDENSSYIQLDIV 684
           NF++  H T     ++ ++ +T++E+   WD  + +V DEN    QL +V
Sbjct: 166 NFLIYPHDTQECKLQMESLSHTTDEMIFQWDPDVPLVVDENIELPQLQLV 215


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 390 LSSLSFCGTTLQHRVMKPALSKS 322
           L ++  CGTTLQ+R+ +  L K+
Sbjct: 133 LITMELCGTTLQNRLDEAILIKN 155


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 119 LPL*PIQGSCHHTPSSVV 172
           +PL P   SCH TP S +
Sbjct: 651 MPLLPRPISCHTTPDSFI 668


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 155 TPSSVVLHIHQWAQSCRLLHSHVSS 229
           T ++V LH+ ++ Q    LH+ +S+
Sbjct: 311 TGATVPLHMQKYVQMIHDLHTRIST 335


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 155 TPSSVVLHIHQWAQSCRLLHSHVSS 229
           T ++V LH+ ++ Q    LH+ +S+
Sbjct: 311 TGATVPLHMQKYVQMIHDLHTRIST 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,900
Number of Sequences: 438
Number of extensions: 3501
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)