Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0312.Seq
(792 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56030.1 68418.m06991 heat shock protein 81-2 (HSP81-2) nearl... 161 4e-40
At5g56010.1 68418.m06989 heat shock protein, putative strong sim... 161 4e-40
At5g56000.1 68418.m06988 heat shock protein 81-4 (HSP81-4) nearl... 160 8e-40
At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea... 159 3e-39
At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata format... 111 4e-25
At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata format... 111 4e-25
At3g07770.1 68416.m00947 heat shock protein-related strong simil... 98 5e-21
At2g04030.2 68415.m00372 heat shock protein, putative strong sim... 97 2e-20
At2g04030.1 68415.m00371 heat shock protein, putative strong sim... 97 2e-20
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 33 0.29
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 29 2.7
At1g29780.1 68414.m03641 NLI interacting factor (NIF) family pro... 28 8.2
>At5g56030.1 68418.m06991 heat shock protein 81-2 (HSP81-2) nearly
identical to SP|P55737 Heat shock protein 81-2 (HSP81-2)
{Arabidopsis thaliana}
Length = 699
Score = 161 bits (392), Expect = 4e-40
Identities = 73/86 (84%), Positives = 82/86 (95%)
Frame = -1
Query: 762 GQLEFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSE 583
GQLEF+A+LFVP+RAPFDLF+ KK+ NNIKLYVRRVFIMDNCED+IPEYL F++G+VDSE
Sbjct: 304 GQLEFKAILFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEDIIPEYLGFVKGIVDSE 363
Query: 582 DLPLNISREMLQQNKILKVIRKNLVK 505
DLPLNISRE LQQNKILKVIRKNLVK
Sbjct: 364 DLPLNISRETLQQNKILKVIRKNLVK 389
Score = 134 bits (323), Expect = 8e-32
Identities = 60/85 (70%), Positives = 73/85 (85%)
Frame = -3
Query: 508 KKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSL 329
KKCLELF E+AE+KE+Y K+YE FSKNLKLGIHEDSQNR K++ELLRYH++ SGDE SL
Sbjct: 389 KKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRTKIAELLRYHSTKSGDELTSL 448
Query: 328 KEYVSRMKENQKHIYYITGENRDQV 254
K+YV+RMKE Q I+YITGE++ V
Sbjct: 449 KDYVTRMKEGQNDIFYITGESKKAV 473
Score = 74.1 bits (174), Expect = 9e-14
Identities = 36/83 (43%), Positives = 51/83 (61%)
Frame = -2
Query: 251 NSSFVERVKKRGYEVVYMTEPIDEYVVQQMREYDGKTLVSVTXXXXXXXXXXXXXXXXXX 72
NS F+E++KK+G EV+YM + IDEY + Q++E++GK LVS T
Sbjct: 475 NSPFLEKLKKKGIEVLYMVDAIDEYAIGQLKEFEGKKLVSATKEGLKLDETEDEKKKKEE 534
Query: 71 XXXXXEGLCKVMKNILDNKVEKV 3
EGLCKV+K++L +KVEKV
Sbjct: 535 LKEKFEGLCKVIKDVLGDKVEKV 557
>At5g56010.1 68418.m06989 heat shock protein, putative strong
similarity to SP|P55737 Heat shock protein 81-2
(HSP81-2) {Arabidopsis thaliana}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00183: Hsp90 protein
Length = 699
Score = 161 bits (392), Expect = 4e-40
Identities = 73/86 (84%), Positives = 82/86 (95%)
Frame = -1
Query: 762 GQLEFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSE 583
GQLEF+A+LFVP+RAPFDLF+ KK+ NNIKLYVRRVFIMDNCED+IPEYL F++G+VDSE
Sbjct: 304 GQLEFKAILFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEDIIPEYLGFVKGIVDSE 363
Query: 582 DLPLNISREMLQQNKILKVIRKNLVK 505
DLPLNISRE LQQNKILKVIRKNLVK
Sbjct: 364 DLPLNISRETLQQNKILKVIRKNLVK 389
Score = 134 bits (323), Expect = 8e-32
Identities = 60/85 (70%), Positives = 73/85 (85%)
Frame = -3
Query: 508 KKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSL 329
KKCLELF E+AE+KE+Y K+YE FSKNLKLGIHEDSQNR K++ELLRYH++ SGDE SL
Sbjct: 389 KKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRTKIAELLRYHSTKSGDELTSL 448
Query: 328 KEYVSRMKENQKHIYYITGENRDQV 254
K+YV+RMKE Q I+YITGE++ V
Sbjct: 449 KDYVTRMKEGQNDIFYITGESKKAV 473
Score = 74.1 bits (174), Expect = 9e-14
Identities = 36/83 (43%), Positives = 51/83 (61%)
Frame = -2
Query: 251 NSSFVERVKKRGYEVVYMTEPIDEYVVQQMREYDGKTLVSVTXXXXXXXXXXXXXXXXXX 72
NS F+E++KK+G EV+YM + IDEY + Q++E++GK LVS T
Sbjct: 475 NSPFLEKLKKKGIEVLYMVDAIDEYAIGQLKEFEGKKLVSATKEGLKLDETEDEKKKKEE 534
Query: 71 XXXXXEGLCKVMKNILDNKVEKV 3
EGLCKV+K++L +KVEKV
Sbjct: 535 LKEKFEGLCKVIKDVLGDKVEKV 557
>At5g56000.1 68418.m06988 heat shock protein 81-4 (HSP81-4) nearly
identical to heat shock protein hsp81.4 [Arabidopsis
thaliana] GI:1906828; contains Pfam profiles PF02518:
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
domain protein, PF00183: Hsp90 protein
Length = 699
Score = 160 bits (389), Expect = 8e-40
Identities = 72/86 (83%), Positives = 82/86 (95%)
Frame = -1
Query: 762 GQLEFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSE 583
GQLEF+A+LFVP+RAPFDLF+ KK+ NNIKLYVRRVFIMDNCED+IP+YL F++G+VDSE
Sbjct: 304 GQLEFKAILFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEDIIPDYLGFVKGIVDSE 363
Query: 582 DLPLNISREMLQQNKILKVIRKNLVK 505
DLPLNISRE LQQNKILKVIRKNLVK
Sbjct: 364 DLPLNISRETLQQNKILKVIRKNLVK 389
Score = 134 bits (324), Expect = 6e-32
Identities = 60/85 (70%), Positives = 73/85 (85%)
Frame = -3
Query: 508 KKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSL 329
KKCLELF E+AE+KE+Y K+YE FSKNLKLGIHEDSQNR K++ELLRYH++ SGDE SL
Sbjct: 389 KKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRTKIAELLRYHSTKSGDELTSL 448
Query: 328 KEYVSRMKENQKHIYYITGENRDQV 254
K+YV+RMKE Q I+YITGE++ V
Sbjct: 449 KDYVTRMKEGQNEIFYITGESKKAV 473
Score = 78.6 bits (185), Expect = 4e-15
Identities = 43/111 (38%), Positives = 62/111 (55%)
Frame = -2
Query: 335 LSQRVCIQDEGEPETYLLHHWRKQRPGANSSFVERVKKRGYEVVYMTEPIDEYVVQQMRE 156
L V EG+ E + + K+ NS F+E++KK+GYEV+YM + IDEY + Q++E
Sbjct: 448 LKDYVTRMKEGQNEIFYITGESKKAV-ENSPFLEKLKKKGYEVLYMVDAIDEYAIGQLKE 506
Query: 155 YDGKTLVSVTXXXXXXXXXXXXXXXXXXXXXXXEGLCKVMKNILDNKVEKV 3
++GK LVS T EGLCKV+K++L +KVEKV
Sbjct: 507 FEGKKLVSATKEGLKLEETDDEKKKKEELKEKFEGLCKVIKDVLGDKVEKV 557
>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
shock protein 83 (HSP83) nearly identical to SP|P27323
Heat shock protein 81-1 (HSP81-1) (Heat shock protein
83) {Arabidopsis thaliana}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00183: Hsp90 protein
Length = 705
Score = 159 bits (385), Expect = 3e-39
Identities = 72/86 (83%), Positives = 83/86 (96%)
Frame = -1
Query: 762 GQLEFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSE 583
GQLEF+A+LFVP+RAPFDLF+ +K+ NNIKLYVRRVFIMDNCE+LIPEYL+F++GVVDS+
Sbjct: 310 GQLEFKAILFVPKRAPFDLFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLSFVKGVVDSD 369
Query: 582 DLPLNISREMLQQNKILKVIRKNLVK 505
DLPLNISRE LQQNKILKVIRKNLVK
Sbjct: 370 DLPLNISRETLQQNKILKVIRKNLVK 395
Score = 133 bits (321), Expect = 1e-31
Identities = 60/93 (64%), Positives = 77/93 (82%), Gaps = 1/93 (1%)
Frame = -3
Query: 508 KKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSL 329
KKC+E+F E+AE+KE+Y K+YE FSKNLKLGIHEDSQNR K+++LLRYH++ SGDE S
Sbjct: 395 KKCIEMFNEIAENKEDYTKFYEAFSKNLKLGIHEDSQNRGKIADLLRYHSTKSGDEMTSF 454
Query: 328 KEYVSRMKENQKHIYYITGENRDQV-RTPHLWR 233
K+YV+RMKE QK I+YITGE++ V +P L R
Sbjct: 455 KDYVTRMKEGQKDIFYITGESKKAVENSPFLER 487
Score = 74.9 bits (176), Expect = 5e-14
Identities = 41/84 (48%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = -2
Query: 251 NSSFVERVKKRGYEVVYMTEPIDEYVVQQMREYDGKTLVSVT-XXXXXXXXXXXXXXXXX 75
NS F+ER+KKRGYEV+YM + IDEY V Q++EYDGK LVS T
Sbjct: 481 NSPFLERLKKRGYEVLYMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEDETEEEKKKRE 540
Query: 74 XXXXXXEGLCKVMKNILDNKVEKV 3
E LCK +K IL +KVEKV
Sbjct: 541 EKKKSFENLCKTIKEILGDKVEKV 564
>At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata formation
protein, putative nearly identical to SHEPHERD
[Arabidopsis thaliana] GI:19570872; contains Pfam
profiles PF02518: ATPase, histidine kinase-, DNA gyrase
B-, and HSP90-like domain protein, PF00183: Hsp90
protein
Length = 823
Score = 111 bits (268), Expect = 4e-25
Identities = 50/90 (55%), Positives = 72/90 (80%), Gaps = 2/90 (2%)
Frame = -1
Query: 762 GQLEFRALLFVPRRAPFDLFEN--KKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVD 589
G +EF+A+L+VP +AP DL+E+ K N+KLYVRRVFI D ++L+P+YL+F++G+VD
Sbjct: 386 GDVEFKAVLYVPPKAPHDLYESYYNSNKANLKLYVRRVFISDEFDELLPKYLSFLKGLVD 445
Query: 588 SEDLPLNISREMLQQNKILKVIRKNLVKNA 499
S+ LPLN+SREMLQQ+ LK I+K L++ A
Sbjct: 446 SDTLPLNVSREMLQQHSSLKTIKKKLIRKA 475
Score = 84.6 bits (200), Expect = 7e-17
Identities = 41/93 (44%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Frame = -3
Query: 508 KKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSL 329
KK +E E E K Y K++ +F K++KLGI ED+ NR +L++LLR+ T+ S + SL
Sbjct: 495 KKDVEKSGENDEKKGQYTKFWNEFGKSVKLGIIEDAANRNRLAKLLRFETTKSDGKLTSL 554
Query: 328 KEYVSRMKENQKHIYYITGENRDQV-RTPHLWR 233
+Y+ RMK++QK I+YITG +++Q+ ++P L R
Sbjct: 555 DQYIKRMKKSQKDIFYITGSSKEQLEKSPFLER 587
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/41 (43%), Positives = 32/41 (78%)
Frame = -2
Query: 248 SSFVERVKKRGYEVVYMTEPIDEYVVQQMREYDGKTLVSVT 126
S F+ER+ K+GYEV++ T+P+DEY++Q + +Y+ K +V+
Sbjct: 582 SPFLERLIKKGYEVIFFTDPVDEYLMQYLMDYEDKKFQNVS 622
>At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata formation
protein, putative nearly identical to SHEPHERD
[Arabidopsis thaliana] GI:19570872; contains Pfam
profiles PF02518: ATPase, histidine kinase-, DNA gyrase
B-, and HSP90-like domain protein, PF00183: Hsp90
protein
Length = 823
Score = 111 bits (268), Expect = 4e-25
Identities = 50/90 (55%), Positives = 72/90 (80%), Gaps = 2/90 (2%)
Frame = -1
Query: 762 GQLEFRALLFVPRRAPFDLFEN--KKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVD 589
G +EF+A+L+VP +AP DL+E+ K N+KLYVRRVFI D ++L+P+YL+F++G+VD
Sbjct: 386 GDVEFKAVLYVPPKAPHDLYESYYNSNKANLKLYVRRVFISDEFDELLPKYLSFLKGLVD 445
Query: 588 SEDLPLNISREMLQQNKILKVIRKNLVKNA 499
S+ LPLN+SREMLQQ+ LK I+K L++ A
Sbjct: 446 SDTLPLNVSREMLQQHSSLKTIKKKLIRKA 475
Score = 84.6 bits (200), Expect = 7e-17
Identities = 41/93 (44%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Frame = -3
Query: 508 KKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSL 329
KK +E E E K Y K++ +F K++KLGI ED+ NR +L++LLR+ T+ S + SL
Sbjct: 495 KKDVEKSGENDEKKGQYTKFWNEFGKSVKLGIIEDAANRNRLAKLLRFETTKSDGKLTSL 554
Query: 328 KEYVSRMKENQKHIYYITGENRDQV-RTPHLWR 233
+Y+ RMK++QK I+YITG +++Q+ ++P L R
Sbjct: 555 DQYIKRMKKSQKDIFYITGSSKEQLEKSPFLER 587
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/41 (43%), Positives = 32/41 (78%)
Frame = -2
Query: 248 SSFVERVKKRGYEVVYMTEPIDEYVVQQMREYDGKTLVSVT 126
S F+ER+ K+GYEV++ T+P+DEY++Q + +Y+ K +V+
Sbjct: 582 SPFLERLIKKGYEVIFFTDPVDEYLMQYLMDYEDKKFQNVS 622
>At3g07770.1 68416.m00947 heat shock protein-related strong
similarity to heat-shock protein [Secale cereale]
GI:556673; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 803
Score = 98.3 bits (234), Expect = 5e-21
Identities = 49/101 (48%), Positives = 75/101 (74%), Gaps = 3/101 (2%)
Frame = -1
Query: 792 PSCSQTLLR*GQLEFRALLFVPRRAPF--DLFENKKRKNNIKLYVRRVFIMDNCE-DLIP 622
P S G++EFR++L+VP +P D N+K KN I+LYV+RVFI D+ + +L P
Sbjct: 385 PLASSHFTTEGEVEFRSILYVPPVSPSGKDDIVNQKTKN-IRLYVKRVFISDDFDGELFP 443
Query: 621 EYLNFIRGVVDSEDLPLNISREMLQQNKILKVIRKNLVKNA 499
YL+F++GVVDS DLPLN+SRE+LQ+++I+++++K LV+ A
Sbjct: 444 RYLSFVKGVVDSHDLPLNVSREILQESRIVRIMKKRLVRKA 484
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/72 (43%), Positives = 51/72 (70%)
Frame = -3
Query: 481 LAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSLKEYVSRMKE 302
L+E++E+Y+K+++ F K+LKLG ED +N +++ LLR+ +S S ++ SL EYV MK
Sbjct: 493 LSENREDYEKFWDNFGKHLKLGCIEDRENHKRIAPLLRFFSSQSENDMISLDEYVENMKP 552
Query: 301 NQKHIYYITGEN 266
QK IY+I ++
Sbjct: 553 EQKAIYFIASDS 564
Score = 44.4 bits (100), Expect = 9e-05
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = -2
Query: 251 NSSFVERVKKRGYEVVYMTEPIDEYVVQQMREYDGKTLVSVT 126
N+ F+E++ ++G EV+Y+ EPIDE VQ ++ Y K V ++
Sbjct: 570 NAPFLEKMLEKGLEVLYLVEPIDEVAVQSLKAYKEKDFVDIS 611
>At2g04030.2 68415.m00372 heat shock protein, putative strong
similarity to heat shock protein [Arabidopsis thaliana]
GI:1906830; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 777
Score = 96.7 bits (230), Expect = 2e-20
Identities = 44/89 (49%), Positives = 72/89 (80%), Gaps = 3/89 (3%)
Frame = -1
Query: 762 GQLEFRALLFVPRRAPFDLFE--NKKRKNNIKLYVRRVFIMDNCE-DLIPEYLNFIRGVV 592
G++EFR++L++P P + + N K KN I+LYV+RVFI D+ + +L P YL+F++GVV
Sbjct: 372 GEVEFRSILYIPGMGPLNNEDVTNPKTKN-IRLYVKRVFISDDFDGELFPRYLSFVKGVV 430
Query: 591 DSEDLPLNISREMLQQNKILKVIRKNLVK 505
DS+DLPLN+SRE+LQ+++I++++RK L++
Sbjct: 431 DSDDLPLNVSREILQESRIVRIMRKRLIR 459
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/81 (38%), Positives = 54/81 (66%)
Frame = -3
Query: 508 KKCLELFEELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSL 329
+K ++ +E++E EN +K++E F + LKLG ED+ N +++ LLR+ +S + +E SL
Sbjct: 459 RKTFDMIQEISES-ENKEKFWENFGRFLKLGCIEDTGNHKRITPLLRFFSSKNEEELTSL 517
Query: 328 KEYVSRMKENQKHIYYITGEN 266
+Y+ M ENQK IYY+ ++
Sbjct: 518 DDYIENMGENQKAIYYLATDS 538
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 317 IQDEGEPETYLLHHWRKQRPGANSS-FVERVKKRGYEVVYMTEPIDEYVVQQMREYDGKT 141
I++ GE + + + A S+ F+E++ ++ EV+Y+ EPIDE +Q ++ Y K
Sbjct: 521 IENMGENQKAIYYLATDSLKSAKSAPFLEKLIQKDIEVLYLVEPIDEVAIQNLQTYKEKK 580
Query: 140 LVSVT 126
V ++
Sbjct: 581 FVDIS 585
>At2g04030.1 68415.m00371 heat shock protein, putative strong
similarity to heat shock protein [Arabidopsis thaliana]
GI:1906830; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 780
Score = 96.7 bits (230), Expect = 2e-20
Identities = 44/89 (49%), Positives = 72/89 (80%), Gaps = 3/89 (3%)
Frame = -1
Query: 762 GQLEFRALLFVPRRAPFDLFE--NKKRKNNIKLYVRRVFIMDNCE-DLIPEYLNFIRGVV 592
G++EFR++L++P P + + N K KN I+LYV+RVFI D+ + +L P YL+F++GVV
Sbjct: 372 GEVEFRSILYIPGMGPLNNEDVTNPKTKN-IRLYVKRVFISDDFDGELFPRYLSFVKGVV 430
Query: 591 DSEDLPLNISREMLQQNKILKVIRKNLVK 505
DS+DLPLN+SRE+LQ+++I++++RK L++
Sbjct: 431 DSDDLPLNVSREILQESRIVRIMRKRLIR 459
Score = 74.5 bits (175), Expect = 7e-14
Identities = 33/83 (39%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Frame = -3
Query: 508 KKCLELFEELAE--DKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEAC 335
+K ++ +E++E +KE+YKK++E F + LKLG ED+ N +++ LLR+ +S + +E
Sbjct: 459 RKTFDMIQEISESENKEDYKKFWENFGRFLKLGCIEDTGNHKRITPLLRFFSSKNEEELT 518
Query: 334 SLKEYVSRMKENQKHIYYITGEN 266
SL +Y+ M ENQK IYY+ ++
Sbjct: 519 SLDDYIENMGENQKAIYYLATDS 541
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 317 IQDEGEPETYLLHHWRKQRPGANSS-FVERVKKRGYEVVYMTEPIDEYVVQQMREYDGKT 141
I++ GE + + + A S+ F+E++ ++ EV+Y+ EPIDE +Q ++ Y K
Sbjct: 524 IENMGENQKAIYYLATDSLKSAKSAPFLEKLIQKDIEVLYLVEPIDEVAIQNLQTYKEKK 583
Query: 140 LVSVT 126
V ++
Sbjct: 584 FVDIS 588
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/65 (27%), Positives = 36/65 (55%)
Frame = -3
Query: 487 EELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSELLRYHTSASGDEACSLKEYVSRM 308
E+ A+ K Y+K + ++KNL+ G E ++R+++++ ASG+E KE
Sbjct: 105 EKAAKRKAEYEKQMDAYNKNLEEGSDESEKSRSEIND----EDEASGEEELLEKEAAGDD 160
Query: 307 KENQK 293
+E ++
Sbjct: 161 EEEEE 165
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/37 (29%), Positives = 25/37 (67%)
Frame = -3
Query: 487 EELAEDKENYKKYYEQFSKNLKLGIHEDSQNRAKLSE 377
E+ A+ K Y+K + ++KNL+ G E ++R+++++
Sbjct: 105 EKAAKRKAEYEKQMDAYNKNLEEGSDESEKSRSEIND 141
>At1g29780.1 68414.m03641 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 221
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = -2
Query: 266 QRPGANSSFVERVKKRGYEVVYMTEPIDEYVVQQMREYDGKTLVS 132
+RPG + F+ER+ + Y+VV T ++EY Q + + D ++S
Sbjct: 91 KRPGV-TEFLERLGEN-YKVVVFTAGLEEYASQVLDKLDKNGVIS 133
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,614,680
Number of Sequences: 28952
Number of extensions: 277245
Number of successful extensions: 948
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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