Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0311.Seq
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    81   8e-17
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     31   0.089
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.3  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.3  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    25   4.4  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   5.8  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   7.7  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 81.0 bits (191), Expect = 8e-17
 Identities = 39/71 (54%), Positives = 51/71 (71%)
 Frame = -2

Query: 471 LLNQPALAGXLVVLTAFLDCKTIILGKSHYLLYVLATAMQPRWLVTLDENLQPLNVSVRV 292
           +L Q A AG + V+ A LD  T +L  SH+LLY +  A++PR L+TL E+ Q L VSVRV
Sbjct: 768 ILGQTAFAGLMTVVLAMLDANTFVLDTSHWLLYAITLAIRPRMLITLGEDGQYLPVSVRV 827

Query: 291 GQAVDVIGKAG 259
           GQAVDV+G+AG
Sbjct: 828 GQAVDVVGQAG 838



 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = -3

Query: 200 ERAELATDEYIPLSPIMEGFVILKKNEDSV 111
           ERAELAT+ Y PL+  +EG VILKKN + +
Sbjct: 859 ERAELATEAYTPLTS-LEGIVILKKNTEDI 887



 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -1

Query: 253 KTIAGSHTHTTPVLL 209
           K I G  THTTPVLL
Sbjct: 841 KVITGWVTHTTPVLL 855


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 31.1 bits (67), Expect = 0.089
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 387 HYLLYVLATAMQPRWLVTLDENLQPLN 307
           H++LYV +  +QP WL   D N+ P N
Sbjct: 333 HFVLYVPSPQIQPLWLENEDSNIIPTN 359


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 100 TEAMTLSSFFLRITNP-SIIGESGMYSSVASSARSPKTAAPASCECGNRLLSSCTGFSDN 276
           T + TL+S     + P S    S   SS  SS+ S  ++AP S    +   SS +    +
Sbjct: 378 TSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSS 437

Query: 277 IHSLS 291
            HSLS
Sbjct: 438 SHSLS 442


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 166 GMYSSVASSARSPKTAAPASCE--CGNRLLSSCTGFSDNIHS 285
           G+YSS ++S+ S  TA P+S      +   SS T  S +I S
Sbjct: 132 GIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITS 173


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 268 SDNIHSLSHTHADVQGLKIFVEGDQPAGLHRSRQYVQQVVGFAEDYGLAV 417
           +DN+  L     +V+ + + + G  PAGL  + +  QQ      D  + V
Sbjct: 75  TDNLRKLDTIEREVEDVDVCIVGAGPAGLSAAIRIKQQAAKANRDIRVVV 124


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 136 ITNPSIIGESGMYSSVASSARSPKTAA-PASCECGNRLLSSCTGFSDNIHSLS 291
           IT+ S+   S   SS+ASS+ +  T+A P S    + L S+    S    SL+
Sbjct: 144 ITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLA 196


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 319 KIFVEGDQPAGLHRSRQYVQQVVGFAEDY 405
           + +++G  P+  HR ++ +QQ+ G  E +
Sbjct: 153 RFYLDGCDPSVAHRVKKQIQQLGGHVETF 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,262
Number of Sequences: 5004
Number of extensions: 32111
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)