Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0311.Seq
(472 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 95 2e-20
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 93 1e-19
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 73 2e-13
03_05_0662 + 26540625-26541152 29 1.9
01_06_1560 + 38251268-38251471,38251567-38251672,38251992-382522... 29 2.5
01_01_0175 - 1503254-1503575,1504398-1504657,1506162-1507028 28 3.3
07_03_0844 - 21971222-21971635 28 4.4
05_02_0156 + 7163756-7163834,7165447-7166225 28 4.4
05_04_0155 + 18595193-18596224,18596863-18597264 27 5.8
04_03_0410 - 15569740-15570213 27 5.8
03_05_0456 - 24498212-24499581,24502660-24503071 27 5.8
03_02_0314 + 7398247-7400877 27 5.8
02_05_0885 - 32488750-32489145,32489372-32490040,32490245-324903... 27 5.8
01_06_0065 + 26107522-26107700,26110875-26111253 27 7.6
>09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 95.5 bits (227), Expect = 2e-20
Identities = 47/71 (66%), Positives = 59/71 (83%)
Frame = -2
Query: 471 LLNQPALAGXLVVLTAFLDCKTIILGKSHYLLYVLATAMQPRWLVTLDENLQPLNVSVRV 292
LL+ ALAG + VL A LD K+IILGK HY+LY+LA AMQPR L+T+DE+L+PL+V V V
Sbjct: 816 LLSPIALAGLVTVLHACLDMKSIILGKYHYMLYILALAMQPRMLLTVDEDLKPLSVPVCV 875
Query: 291 GQAVDVIGKAG 259
GQAVDV+G+AG
Sbjct: 876 GQAVDVVGQAG 886
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/29 (65%), Positives = 27/29 (93%)
Frame = -3
Query: 203 GERAELATDEYIPLSPIMEGFVILKKNED 117
GERAELAT++Y+PL+P++EGFVIL+ N +
Sbjct: 906 GERAELATEKYLPLTPVLEGFVILRNNPE 934
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 253 KTIAGSHTHTTPVLLSS 203
KTI G TH+TPVLL++
Sbjct: 889 KTITGFQTHSTPVLLAA 905
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 93.1 bits (221), Expect = 1e-19
Identities = 44/71 (61%), Positives = 57/71 (80%)
Frame = -2
Query: 471 LLNQPALAGXLVVLTAFLDCKTIILGKSHYLLYVLATAMQPRWLVTLDENLQPLNVSVRV 292
LL+ AL G + VL A LD K+ ILGK HY+LY++ AMQPR L+T+DE+L+PL+V VRV
Sbjct: 776 LLSPMALGGLVTVLHACLDMKSTILGKYHYILYIIVLAMQPRMLLTVDEDLKPLSVPVRV 835
Query: 291 GQAVDVIGKAG 259
GQAVDV+G+AG
Sbjct: 836 GQAVDVVGQAG 846
Score = 50.0 bits (114), Expect = 9e-07
Identities = 21/29 (72%), Positives = 27/29 (93%)
Frame = -3
Query: 203 GERAELATDEYIPLSPIMEGFVILKKNED 117
GERAELAT++YIPL+ ++EGFVILKKN +
Sbjct: 866 GERAELATEKYIPLTSVLEGFVILKKNPE 894
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 253 KTIAGSHTHTTPVLLSS 203
KTI G TH+TPVLL++
Sbjct: 849 KTITGFQTHSTPVLLAA 865
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 72.5 bits (170), Expect = 2e-13
Identities = 35/56 (62%), Positives = 45/56 (80%)
Frame = -2
Query: 471 LLNQPALAGXLVVLTAFLDCKTIILGKSHYLLYVLATAMQPRWLVTLDENLQPLNV 304
LL+ ALAG + VL A LD K+IILGK HY+LY+L AMQPR L+T+DE+L+PL+V
Sbjct: 779 LLSPIALAGLVTVLHACLDMKSIILGKYHYMLYILTLAMQPRMLLTVDEDLKPLSV 834
Score = 35.1 bits (77), Expect = 0.029
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = -3
Query: 188 LATDEYIPLSPIMEGFVILKKNED 117
L+ Y+PL+P++EGFVIL+KN +
Sbjct: 846 LSMCRYLPLTPVLEGFVILRKNPE 869
>03_05_0662 + 26540625-26541152
Length = 175
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 377 CTYWRLRCSPAGWSPSTKIFSP*TSACVWD 288
C YW L+ P WS S + +P WD
Sbjct: 17 CKYWLLKTEPGEWSWSDQARAPGGGVAPWD 46
>01_06_1560 +
38251268-38251471,38251567-38251672,38251992-38252203,
38252306-38252512,38253327-38254694
Length = 698
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -1
Query: 403 NPRQIPLLAVR---IGDCDAAPLAGHPRRKSSALERQ 302
+PRQ+ L++R IG+C +P+A P + +E +
Sbjct: 575 SPRQLEKLSIRSSPIGECSLSPVADKPEKSEVVIESE 611
>01_01_0175 - 1503254-1503575,1504398-1504657,1506162-1507028
Length = 482
Score = 28.3 bits (60), Expect = 3.3
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = -1
Query: 373 RIGDCDAAPLAGHPRRKSSALERQRACGTGCGCY----RKSRYT-KTIAGSHTHTTPVLL 209
+I D + + HPR +S + R A GTG G + + +RY +T AG T +LL
Sbjct: 335 QIHDLHSKLILDHPRGRSQQIHRLIASGTGNGIFDGNIKVNRYAQQTDAGQETKC--LLL 392
Query: 208 SSASEQN 188
SS + N
Sbjct: 393 SSKALVN 399
>07_03_0844 - 21971222-21971635
Length = 137
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 379 AVRIGDCDAAPLAGHPRRKSSALERQRACGTGCGC 275
AVRI + D + + H ++ E +RAC C C
Sbjct: 57 AVRISNGDISEVFDHRMHDTNVQELERACKVACWC 91
>05_02_0156 + 7163756-7163834,7165447-7166225
Length = 285
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = -1
Query: 400 PRQIPLLAVRIGDCDAAPLAGHPRRKSSALE 308
PR++P R +C+AAPLAG ++ +++LE
Sbjct: 130 PRRLP--GRRRHECEAAPLAGEAKQCATSLE 158
>05_04_0155 + 18595193-18596224,18596863-18597264
Length = 477
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 223 SCECGNRLLSSCTGFSDNIHSLSHTHADVQG-LKIFVEGDQPAGLHRS 363
S +C N +L SCT N ++ A VQG + + G Q A H S
Sbjct: 34 SSKCSNLVLKSCTATRPNRPFVARASAAVQGQTQTPLTGSQQASGHSS 81
>04_03_0410 - 15569740-15570213
Length = 157
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -1
Query: 331 RRKSSALERQRACGTGCGCYRKSRYTKTIAGSHTHTTPVLLSSASEQ 191
RR AL R R C G GC ++ T G T P L S A +
Sbjct: 42 RRGMVALRRLRRCSGGWGCSGEADPASTGLGRADPTPPCLGSDAGNR 88
>03_05_0456 - 24498212-24499581,24502660-24503071
Length = 593
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 399 LGKSHYLLYVLATAMQPRWLVTLDENL-QPLNVSVRVGQAVDVI 271
+G++ YL ++ T M P WL + P+N +V + A VI
Sbjct: 370 VGQARYLTHIARTHMMPPWLARVHPGTGTPVNATVAMLLATAVI 413
>03_02_0314 + 7398247-7400877
Length = 876
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 129 LENHESLHYRRERYVLVSRQFCSLAEDSS 215
LENH+S +R R++++S A+D+S
Sbjct: 560 LENHDSDVNKRSRHIIISEDVSVFAKDNS 588
>02_05_0885 -
32488750-32489145,32489372-32490040,32490245-32490301,
32490814-32491152
Length = 486
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 284 LWMLSEKPVHE-DNSRFPHSHDAGAA 210
L +++E PV+E DNSRF H AA
Sbjct: 156 LHLINETPVYEQDNSRFSHEDGTSAA 181
>01_06_0065 + 26107522-26107700,26110875-26111253
Length = 185
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 392 NPTTCCTYWRLRCSPAGWSPSTK 324
+P C WRL C+PA P+T+
Sbjct: 18 HPPCPCPAWRLCCTPARLRPATR 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,250,198
Number of Sequences: 37544
Number of extensions: 233382
Number of successful extensions: 786
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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