Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0311.Seq
         (472 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56323| Best HMM Match : CDtoxinA (HMM E-Value=2.3)                  32   0.28 
SB_56796| Best HMM Match : CITED (HMM E-Value=1.2)                     29   1.9  
SB_47597| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)                 28   4.5  
SB_11981| Best HMM Match : CH (HMM E-Value=0.00075)                    28   4.5  
SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029)                    27   5.9  

>SB_56323| Best HMM Match : CDtoxinA (HMM E-Value=2.3)
          Length = 290

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -2

Query: 363 TAMQPRWLVTLDENLQPLNVSVRVGQ 286
           T   PR LVT D  L+P  V+VRVGQ
Sbjct: 129 TVKTPRMLVTFDTELRPKPVTVRVGQ 154


>SB_56796| Best HMM Match : CITED (HMM E-Value=1.2)
          Length = 431

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 364 DCDAAPLAGHP-RRKSSALERQRACGTGCGCYRKSRYTKTIAGSHTHTTPVLLSSASEQN 188
           D  A P    P R   SAL RQR    G GCY  S+ T     S  H  P  +  A+EQ+
Sbjct: 179 DGGAPPTRPPPGRAPRSALRRQRFALPGLGCYPWSKQTFR-HESALHPYPHDVDDAAEQD 237

Query: 187 W 185
           +
Sbjct: 238 Y 238


>SB_47597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 145 PSIIGESGMYSSVASSARSPKTAAPASCECGNRL 246
           P ++G +G+  SV+      +  A  SC CG+RL
Sbjct: 2   PQLLGNTGVLLSVSYGEYFTEGFACVSCRCGSRL 35


>SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
          Length = 1640

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -1

Query: 349  PLAGHPRRKSSALERQRACGTGCGCYRKSRYT 254
            PLA   R +S AL RQR    G GCY  S+ T
Sbjct: 1464 PLAADSRPRS-ALRRQRFALPGLGCYPWSKLT 1494


>SB_11981| Best HMM Match : CH (HMM E-Value=0.00075)
          Length = 823

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 175 SSVASSARSPKTAAPASC 228
           SS+ SS RSP++ +PASC
Sbjct: 31  SSMGSSRRSPRSISPASC 48


>SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029)
          Length = 498

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 90  FLLNRGHDAILVFLENHESLHYRRERYVLVSRQF 191
           F +++G+   +VFL+  +SL YRR R+  V  +F
Sbjct: 174 FNIDKGNVNAVVFLDLTKSLWYRRSRHSFVQIKF 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,805,199
Number of Sequences: 59808
Number of extensions: 255080
Number of successful extensions: 729
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)