Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0311.Seq
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...    71   3e-13
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass...    31   0.42 
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass...    31   0.42 
Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AC006671-4|AAF39917.1|  373|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AF099915-9|AAC68774.1|  108|Caenorhabditis elegans Hypothetical ...    28   2.9  
U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finge...    27   5.1  
Z70685-1|CAA94607.1|  522|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z19122-1|CAA79529.1|  522|Caenorhabditis elegans hypothetical po...    27   9.0  
U23525-10|AAC46571.2|  503|Caenorhabditis elegans Hypothetical p...    27   9.0  
U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
            regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 42/78 (53%), Positives = 51/78 (65%), Gaps = 7/78 (8%)
 Frame = -2

Query: 471  LLNQPALAGXLVVLTAFLDCK-TIILGKSHYLLYVLATAMQPRWLVTLDE------NLQP 313
            LL+  ALA  L +  +FLD   TI+  + HYLLY L  AMQPR L TL E      +L+ 
Sbjct: 846  LLSPSALASLLSICFSFLDANNTILNNRQHYLLYTLVLAMQPRMLTTLVEDEMKPGSLKQ 905

Query: 312  LNVSVRVGQAVDVIGKAG 259
            LNVSVRVGQAVDV+ +AG
Sbjct: 906  LNVSVRVGQAVDVVAQAG 923



 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = -3

Query: 203  GERAELATDEYIPLSPIMEGFVILKKNED 117
            GERAELA DEY+ ++P +EG VILKKN D
Sbjct: 943  GERAELANDEYLSVTPHLEGLVILKKNPD 971



 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -1

Query: 253 KTIAGSHTHTTPVLLS 206
           KTI G  THTTPVLL+
Sbjct: 926 KTITGFQTHTTPVLLA 941


>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform b protein.
          Length = 1321

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 256 CTGFSDNIHSLSHTHADVQGLKIFVEGDQPAG 351
           CT   D +HS+SHT++D++  K+ ++ +   G
Sbjct: 413 CTTIRDLVHSVSHTYSDLENNKLKLDDESRLG 444


>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform a protein.
          Length = 1372

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 256 CTGFSDNIHSLSHTHADVQGLKIFVEGDQPAG 351
           CT   D +HS+SHT++D++  K+ ++ +   G
Sbjct: 413 CTTIRDLVHSVSHTYSDLENNKLKLDDESRLG 444


>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 386 TTCCTYWRLRCSPAGWSPS 330
           T CC  W   C+P G+SPS
Sbjct: 163 TFCCRAWHGSCAPKGYSPS 181


>AC006671-4|AAF39917.1|  373|Caenorhabditis elegans Hypothetical
           protein K08A2.4 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +1

Query: 196 RSPKTAAPASCECGNRLLSSCTGFSDNIHSLSHTHADVQGLKIFVEGDQ---PAGLHRSR 366
           RSP+ +   S E   ++ +    + DN  SLS T  + Q  K + + D    P  +H + 
Sbjct: 206 RSPEGSEGGSVEKEVKVEAPIMVYQDNSTSLSRTKGNRQSSKYYQQDDDDQPPPLMHPTE 265

Query: 367 QYVQQVV 387
           +Y + VV
Sbjct: 266 EYAKSVV 272


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 133 RITNPSIIGESGMYSSVASSARSPKTAAPASCECGN 240
           R T+PS +  SG  S ++SS  S    +P+S   G+
Sbjct: 512 RSTSPSAVEPSGGMSPISSSVSSASAPSPSSLSAGS 547


>AF099915-9|AAC68774.1|  108|Caenorhabditis elegans Hypothetical
           protein E02H9.9 protein.
          Length = 108

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -3

Query: 365 RLRCSPAGWSPST---KIFSP*TSACVWDRLWMLSEKP 261
           R+RC  +G+ PST   +IFS      + +  WM+S +P
Sbjct: 3   RIRCELSGFGPSTFFSEIFSKEVDDKIGETDWMVSRRP 40


>U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finger
           b-box coiled coil)domain containing protein 2 protein.
          Length = 1032

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 400 PRQIPLLAVRIGDCDAAPLAGHPRRKSSAL-ERQRACGTGCGC 275
           PR +  L     DC  A L GH + KS+A+ E++RA      C
Sbjct: 72  PRVLDCLHSMCEDCIIAQLDGHLQAKSAAIEEKKRATAAMLDC 114


>Z70685-1|CAA94607.1|  522|Caenorhabditis elegans Hypothetical
           protein R07D5.1 protein.
          Length = 522

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 340 GHPRRKSSALERQRACGTGCGCY 272
           GH R   S L+    CG  CGCY
Sbjct: 295 GHSRSCFSNLQLGANCGRHCGCY 317


>Z19122-1|CAA79529.1|  522|Caenorhabditis elegans hypothetical
           polypeptide protein.
          Length = 522

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 340 GHPRRKSSALERQRACGTGCGCY 272
           GH R   S L+    CG  CGCY
Sbjct: 295 GHSRSCFSNLQLGANCGRHCGCY 317


>U23525-10|AAC46571.2|  503|Caenorhabditis elegans Hypothetical
           protein K11G12.6a protein.
          Length = 503

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 99  NRGHDAILVFLENHESLHYRRERYV 173
           N+G+DA+L +L  H+ ++ R+  +V
Sbjct: 431 NKGNDALLNYLTEHKIINKRKSEFV 455


>U23525-9|ABC71820.1|  766|Caenorhabditis elegans Hypothetical
           protein K11G12.6b protein.
          Length = 766

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 99  NRGHDAILVFLENHESLHYRRERYV 173
           N+G+DA+L +L  H+ ++ R+  +V
Sbjct: 694 NKGNDALLNYLTEHKIINKRKSEFV 718


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,279,151
Number of Sequences: 27780
Number of extensions: 184998
Number of successful extensions: 610
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)