Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0311.Seq
         (472 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   5.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   6.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 118 SSFFLRITNPSIIGESGMYSSVASSARSPKTAAPASCECGNRLLSSC 258
           SS +L + N      S  Y S A+++ +  +  PAS      +LS C
Sbjct: 813 SSDYLMVGNSP--ASSPRYLSAAATSSTSTSPRPASSTAATLVLSGC 857


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +3

Query: 129 LENHESLHYRRER 167
           L NH+S+++RR++
Sbjct: 417 LNNHKSIYHRRQK 429


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 293 WDRLWML 273
           WDRLW+L
Sbjct: 133 WDRLWVL 139


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 138 DSQEKRG*RHGLCSIKMYLSCNL 70
           D  +K+G   G  SI  Y  C L
Sbjct: 779 DKSKKQGSSAGTSSITKYTGCEL 801


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 441 LVVLTAFLDCKTIILGKSHYLL 376
           ++VLT  L    ++LG S Y L
Sbjct: 183 VLVLTVTLSASAMVLGLSSYSL 204


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 138 DSQEKRG*RHGLCSIKMYLSCNL 70
           D  +K+G   G  SI  Y  C L
Sbjct: 869 DKSKKQGSSAGTSSITKYTGCEL 891


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,334
Number of Sequences: 438
Number of extensions: 2401
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)