Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0310.Seq
(284 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 31 0.043
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 2.8
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 24 3.7
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 24 3.7
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 24 3.7
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 24 4.9
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 23 6.5
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 23 6.5
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 23 8.5
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 23 8.5
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 23 8.5
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 23 8.5
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 30.7 bits (66), Expect = 0.043
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 17 WTVG--QTFCSIQSMKLDTLVYXPGSSGRSQPIPNDVTPII 133
WT+G + + S + ++ + Y PG SG + IP D PII
Sbjct: 147 WTIGYDERYGSGRRLQQALMYYKPGDSGHLRSIPLDFCPII 187
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 24.6 bits (51), Expect = 2.8
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -2
Query: 232 EVGWGSGCMSG*LWRSSPS*NISSYIVSRQDILYN 128
+V WGS S ++ SP N++ + V+ + +LY+
Sbjct: 95 DVKWGSSFASNLIFTCSPLGNLNVWDVNLEALLYD 129
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 24.2 bits (50), Expect = 3.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 93 PELPGXYTRVSSFIDWIEQNVWP 25
P P T VS F + IE+N WP
Sbjct: 355 PFTPDLSTPVSKFGEAIEKNKWP 377
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 24.2 bits (50), Expect = 3.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 142 LALRRCRKRYFNLERTSRVTLT 207
+ALRRC YFN+ + R+ T
Sbjct: 86 VALRRCPDSYFNISQILRLAGT 107
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 24.2 bits (50), Expect = 3.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 177 VEISLPTSSQGKIYCIIGV 121
+E SLP + KIYC+ GV
Sbjct: 468 LETSLPYAPDMKIYCVHGV 486
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 23.8 bits (49), Expect = 4.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 204 DMHPLPQPTSQRTA 245
D+HPLP P++ TA
Sbjct: 847 DVHPLPPPSTSTTA 860
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 23.4 bits (48), Expect = 6.5
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3
Query: 186 DLQSHPDMHPLPQPTSQRTADD 251
++Q+HP P QP S+ D
Sbjct: 358 EMQNHPSSWPFMQPVSKEDVPD 379
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 23.4 bits (48), Expect = 6.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 13 LVDCRPNILFDPINE 57
L+D P IL+DPI+E
Sbjct: 525 LIDQHPVILYDPIHE 539
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 23.0 bits (47), Expect = 8.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 168 IFQLGEDLQSHPDMHPLPQPTSQ 236
I ++ D+H LP PTSQ
Sbjct: 581 ILDASATMEKQYDLHRLPTPTSQ 603
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 23.0 bits (47), Expect = 8.5
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +3
Query: 198 HPDMHPLPQPTSQRT 242
+P++ P P+PT +RT
Sbjct: 18 NPNVEPTPKPTKRRT 32
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 23.0 bits (47), Expect = 8.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -1
Query: 275 NRHWCGVKIISCALG 231
NRHW G I C +G
Sbjct: 189 NRHWGGNGAIGCGVG 203
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 23.0 bits (47), Expect = 8.5
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = +1
Query: 136 IYLALRRCRKRYFNLERTSRVTLTCIHSPSQLPSAQLMILTPHQCLLHE 282
+Y L+ YF++ + S + +C + + L+ P QC L++
Sbjct: 324 LYFFLQAIWPVYFSIYKMSDMAASCTYMAAMPACVILLWFEPLQCWLYK 372
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,302,116
Number of Sequences: 5004
Number of extensions: 24765
Number of successful extensions: 64
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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