Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0310.Seq
(284 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0778 + 20492822-20493920,20494605-20494648 27 1.8
01_06_1570 + 38312319-38314259 27 1.8
02_05_0151 - 26299042-26299207,26301678-26301851,26301926-263019... 27 2.3
02_02_0529 - 11208973-11211143,11211703-11211772,11211993-112120... 27 2.3
03_06_0762 + 36078414-36078539,36078700-36078750,36078832-360789... 27 3.1
01_06_0855 - 32494491-32496092 27 3.1
04_03_0462 + 16186884-16187105 26 4.1
12_02_0125 - 13949652-13949822,13949955-13950089,13950309-13950566 26 5.4
10_07_0005 - 11744073-11745653 26 5.4
07_01_0832 - 6761239-6761675,6761878-6761920 25 7.1
03_05_0444 + 24396375-24396584,24396968-24397021,24397426-243975... 25 7.1
02_04_0650 + 24728700-24728725,24729582-24729660,24729802-247298... 25 7.1
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696... 25 9.4
02_02_0535 - 11292509-11294679,11294971-11295040,11295268-112953... 25 9.4
>10_08_0778 + 20492822-20493920,20494605-20494648
Length = 380
Score = 27.5 bits (58), Expect = 1.8
Identities = 28/73 (38%), Positives = 36/73 (49%)
Frame = -3
Query: 246 QLCAGKLAGGVDACQGDSGGPLQVEISLPTSSQGKIYCIIGVTSFGIGCDLPELPGXYTR 67
Q G+L GVDA +GG + V I L SSQG +Y V +F IG P P
Sbjct: 24 QATRGRLLAGVDATPPAAGGAVAVPIYL--SSQG-LY----VANFTIG--TPPQP----- 69
Query: 66 VSSFIDWIEQNVW 28
VS+ +D + VW
Sbjct: 70 VSAVVDLTGELVW 82
>01_06_1570 + 38312319-38314259
Length = 646
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 138 ISCLETM*EEIFQLGEDLQSHPDMHPLPQPTSQRTADDLDTAPVSVA 278
++C TM E + L D+ PD+ PQP QR A D A S +
Sbjct: 585 VACRPTMPEALRMLEGDMDV-PDLPERPQPYGQRIAFDEGEANFSAS 630
>02_05_0151 -
26299042-26299207,26301678-26301851,26301926-26301987,
26302082-26302329,26303341-26303416,26303796-26303987,
26304109-26304225
Length = 344
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 219 GVDACQGDSGGPLQVEISLPTSSQGKIYCI-IGVTS-FGIGCD 97
GVD+C G+ GG L + + + I GV+S FG CD
Sbjct: 75 GVDSCYGEPGGVLSGRLGVNGEKGSTQFQISYGVSSAFGFRCD 117
>02_02_0529 -
11208973-11211143,11211703-11211772,11211993-11212049,
11212769-11212819,11213112-11213264,11216095-11216255,
11216609-11216642
Length = 898
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 81 GXYTRVSSFIDWIEQNVWPT 22
G +R SS +DW + + WPT
Sbjct: 170 GSISRQSSTLDWAQDSYWPT 189
>03_06_0762 +
36078414-36078539,36078700-36078750,36078832-36078981,
36079055-36079803,36079914-36080013,36080116-36080259,
36080333-36080452,36080532-36080846
Length = 584
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 195 SHPDMHPLPQPTSQRT 242
SH D HP P P S+RT
Sbjct: 31 SHDDAHPHPHPQSRRT 46
>01_06_0855 - 32494491-32496092
Length = 533
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 260 GVKIISCALGSWLGEWMHVRVTLEVLSK 177
GV ++ CA+GS L E HVR +V+ +
Sbjct: 496 GVYMLRCAIGSTLTEERHVREAWKVVQE 523
>04_03_0462 + 16186884-16187105
Length = 73
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 198 DSGGPLQVEISLPTSSQGKIYCIIGVTSFG-IGCDL 94
DSG + + S+P +++ K++ + G G GC++
Sbjct: 23 DSGNQISPKTSVPATAESKLWDVFGEPVLGDFGCEI 58
>12_02_0125 - 13949652-13949822,13949955-13950089,13950309-13950566
Length = 187
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 193 RVTLTCIHSPSQLP 234
+ L+C+HSPS+LP
Sbjct: 129 KAKLSCVHSPSELP 142
>10_07_0005 - 11744073-11745653
Length = 526
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 260 GVKIISCALGSWLGEWMHVRVTLEVL 183
GV ++ CA+GS L E HVR +V+
Sbjct: 486 GVYMLRCAVGSTLTEERHVREAWKVV 511
>07_01_0832 - 6761239-6761675,6761878-6761920
Length = 159
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 195 SGGPLQVEISLPTSSQGKIYCIIGVTSFG 109
SGG ++ SL +G IY + ++S+G
Sbjct: 106 SGGAYEIATSLEALFEGPIYSLYSLSSYG 134
>03_05_0444 +
24396375-24396584,24396968-24397021,24397426-24397517,
24397610-24397685,24397838-24397900,24398002-24398094,
24398694-24398819,24398895-24398999,24399071-24399127,
24399149-24399274,24399348-24399424,24400312-24400384,
24400430-24400492
Length = 404
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -2
Query: 280 RATDTGAVSRSSAVRWE--VGWGSGCMSG 200
RAT GAV R +R E G G+G +SG
Sbjct: 33 RATACGAVGRGRRLRCEFVAGGGNGALSG 61
>02_04_0650 +
24728700-24728725,24729582-24729660,24729802-24729889,
24730216-24730297,24731083-24731278,24731432-24731816,
24733332-24734428,24734621-24734886,24735565-24735631,
24735722-24735772,24736033-24736123,24736239-24736345
Length = 844
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 226 QLPSAQLMILTPHQC 270
+LPS+QL+I PH C
Sbjct: 227 ELPSSQLLIKEPHTC 241
>03_02_0952 +
12666750-12666777,12666965-12667185,12669464-12669649,
12670147-12670212,12670335-12670427,12670528-12670659,
12670794-12670895,12670993-12671070,12671148-12671219,
12672185-12672292,12672368-12672465,12672904-12672964,
12673058-12673120,12673228-12673284,12673571-12673729,
12674310-12674441,12674516-12674602,12674667-12674738,
12675899-12675985,12676052-12676427,12676727-12676788,
12676946-12677014,12677096-12677142,12677189-12677342,
12677874-12677999
Length = 911
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 264 VRCQDHQLCAGKLAGGVDACQGDSGGPLQVEISLPTSSQGKIYCI 130
+R +D L A + + +G GP++ IS +S GK+ C+
Sbjct: 456 IRTEDMDLIAERGIAAHYSGRGVVSGPVRPGISSGRNSNGKVICL 500
>02_02_0535 -
11292509-11294679,11294971-11295040,11295268-11295324,
11298629-11298789,11299123-11299156
Length = 830
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 81 GXYTRVSSFIDWIEQNVWPT 22
G +R SS DW + + WPT
Sbjct: 102 GSISRQSSTPDWAQDSYWPT 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,423,046
Number of Sequences: 37544
Number of extensions: 199688
Number of successful extensions: 649
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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