Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0310.Seq
(284 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 43 8e-07
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.97
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.97
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 0.97
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 1.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 1.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 1.7
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 22 1.7
EF531707-1|ABP57431.1| 138|Apis mellifera structural cuticle pr... 21 3.0
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 21 3.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 3.9
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 20 5.2
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 20 5.2
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 20 5.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 20 6.8
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 19 9.0
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 19 9.0
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 42.7 bits (96), Expect = 8e-07
Identities = 28/67 (41%), Positives = 37/67 (55%)
Frame = -3
Query: 243 LCAGKLAGGVDACQGDSGGPLQVEISLPTSSQGKIYCIIGVTSFGIGCDLPELPGXYTRV 64
+CA A G DACQ DSGGP+ L + + K IG+ S+G C + P T+V
Sbjct: 335 MCA--YAKGKDACQMDSGGPV-----LWQNPRTKRLVNIGIISWGAECG--KYPNGNTKV 385
Query: 63 SSFIDWI 43
S+IDWI
Sbjct: 386 GSYIDWI 392
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 0.97
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 236 LGSWLGEWMHVRVTLEVLSKLKYLFLHRLKARYIV 132
LGS+ M + + VL+ L +F HR RY++
Sbjct: 257 LGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 0.97
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 236 LGSWLGEWMHVRVTLEVLSKLKYLFLHRLKARYIV 132
LGS+ M + + VL+ L +F HR RY++
Sbjct: 257 LGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 0.97
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 236 LGSWLGEWMHVRVTLEVLSKLKYLFLHRLKARYIV 132
LGS+ M + + VL+ L +F HR RY++
Sbjct: 257 LGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 1.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 236 LGSWLGEWMHVRVTLEVLSKLKYLFLHRLKARYIV 132
+GS+ M + + VL+ L +F HR RY++
Sbjct: 257 IGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 1.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 236 LGSWLGEWMHVRVTLEVLSKLKYLFLHRLKARYIV 132
+GS+ M + + VL+ L +F HR RY++
Sbjct: 257 IGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 1.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 236 LGSWLGEWMHVRVTLEVLSKLKYLFLHRLKARYIV 132
+GS+ M + + VL+ L +F HR RY++
Sbjct: 257 IGSYFNCIMFMVASSVVLTVLVLIFHHRTPDRYVM 291
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 21.8 bits (44), Expect = 1.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 204 QGDSGGPLQVEISLPTSSQG 145
Q D GGPL ++ + T+ G
Sbjct: 441 QSDDGGPLSLKNKVETTHSG 460
>EF531707-1|ABP57431.1| 138|Apis mellifera structural cuticle
protein protein.
Length = 138
Score = 21.0 bits (42), Expect = 3.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 198 DSGGPLQVEISLPTSSQG 145
+SG P QV+ P SQG
Sbjct: 56 ESGQPKQVDNETPVVSQG 73
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 21.0 bits (42), Expect = 3.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 269 HWCGVKIISCALG 231
H CGVK I C+ G
Sbjct: 540 HVCGVKGIPCSWG 552
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 3.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 236 LGSWLGEWMHVRVTLEVLSKLKYLFLHRLKARYIV 132
LGS+ M + + VL+ L F HR RY++
Sbjct: 325 LGSYFNCIMFMVASSVVLTVLVLNFHHRTPDRYVM 359
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 20.2 bits (40), Expect = 5.2
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +2
Query: 17 WTVGQTFCSIQSM 55
W +G FC I +M
Sbjct: 118 WVLGPLFCQIYAM 130
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 20.2 bits (40), Expect = 5.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +2
Query: 17 WTVGQTFCSIQSMKLDT 67
+ G+ FC IQS +T
Sbjct: 120 YVFGEAFCIIQSFAAET 136
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 20.2 bits (40), Expect = 5.2
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +2
Query: 17 WTVGQTFCSIQSM 55
W +G FC I +M
Sbjct: 84 WVLGPLFCQIYAM 96
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 6.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 236 LGSWLGEWMHVRVTLEVLSKLKYLFLHRLKARYIV 132
+GS+ M + + VL+ L F HR RY++
Sbjct: 325 IGSYFNCIMFMVASSVVLTVLVLNFHHRTPDRYVM 359
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 19.4 bits (38), Expect = 9.0
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = +1
Query: 187 TSRVTLTCIHSP 222
++ VTL C++SP
Sbjct: 747 SATVTLVCLYSP 758
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 19.4 bits (38), Expect = 9.0
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = +1
Query: 187 TSRVTLTCIHSP 222
++ VTL C++SP
Sbjct: 837 SATVTLVCLYSP 848
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,395
Number of Sequences: 438
Number of extensions: 1917
Number of successful extensions: 18
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used: 5619645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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